Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1168 ATGGAAGCTACCACCACCCAAACAGAGAAGATATATGTTGCTGTGAGTAATGATCTTCAAGATGGAATCAAAACCTTGAATTGGGCTCTCCATAAATGGAAATCTCATCCTATTTCCATTGTTATTCTCTTTGTCAATCATAATACTTCCAAGGATCTTGTCCAAACCCCATTTGGGAAACTCCCAGCAAGATCTGTGAACGATGAGATGTTACCAGCTTTCAGGAAACAAGAACAAGATAAAATCGACAAACTTCTTTCCAAGTACACGTCTTTCTGTGACAAGGTGCCATTTGAAACACTTGAAGTCGAGAAATTGGATGAACCAATCCAAAAAAGAATCGTGGACATGATTATTGGTCAAGAAATAACCAAACTTGTCATTGGATTTTCAGTGATGAAACCCTCCTGGAAATCACAAGGTGCCATAAATGGATTCTTCTATATTCATCAGCATAAGCCTGAATACTGTGAACTGTTCATCTTATGCGGAGGGAAACAAGTGTTCATGAGAGGGCAGAACGATGAGAAGATCATGGAGGACGACAATGGTGTTGTGGTAGCCAGAGTAAGAGACAAGAAAACTTTTAAGGATTGGCTAGAGAAAGTGTTTCCTAACAACATAGATTTCCCAGATTATAGAATCTCTCCTCGACCAGCAGCATCAAATTCTTCTTCATTATCAGCAAGTATGGCATCTACAGGTTCACTACAGAGCCAGTGGGAAGTCCATCTGCAAGAGATTGAAACTTATTTCCAGGATTTGTGTTCTTCTAACATGAATATTGATGAACAAATTGGACTTGAGGAACAAGACAGTGACGTCTCGCGGATTAATGGAATTCAGCTAGATGATGTCAGGCAACAGAACAATTCTAAACTGAAAAGAATTGAGAGCCTGCAAGGAAAATTGGAAGAGGCAAGGAAGATGATCCAACTGAAGAGGAAAGAAGCTAAGGATCAAAGTGATAGGCAGGCAAAAGCTGAATGGGCTATATGTTTAAGCAACGCTCGGGCTCAAGACCTTGAAGGCAAAATTAACGAAGAGATGAACATGAAGGAGGAGTTAGCAAAAGAATTGGAAGCAGAAAAAGAAACCATATATGAAATCAGACGTGATATTGAAGAAAGCAGAAAAAGGTTAAGCTCATTGTTGGAGCTTCAATTGGAGCTCTCAAACAAGCTTCAGATCTCTACACAAGCAAAATCACAAGCCGAAATCCAACTGGAGAACGCGGCGTATATCAGGTCGGCGATGATGGCCGACATAGACAAGCTTAGGAGAGAAAGAGACGTGTTTTACAGAAGGATCGAGTTCTGTAAAGATAAGGATGCCATAGGAATGGCGGCCAAGTTGATTGAACCCAGTTTAAGTTTCAGAGAGTACACGATGGACGAGATTAGGTTGGCTACCGACGACTTCTCCGACCGCCTCATGTTGAAGTCCGGTGGTGCTGACAGGACTCATGTTTACAGAGGAAAGATCCATCATTCCACTGTAGCCATCAAGATGCTCAATTCCAATCATTATTGCTCCCCCCAAGACCTCCAAGCCAAGGTGAGACTTCTTGGCGGCATTCGACATCCTCATGTGGTTGCTCTGGTGGGCTTTTGCACTGAGCTAGAATGCATAGTTCTGGAATATATGAACAATGGTAGCTTGAGGGACATGCTATTTTCTCGAAGAAGAAACCGGGCCTTACGATGGCAAGACCGAATCAGGATATCTACTGAAGTTTGTTCTGGCCTGGGCTTTCTTCATTCAGCCCAGCCCAGGCCCTTCATTCATGGTCACCTAACTCCCTCTAGCATCCTCCTTGATCGCAATCTTGTTGCAAAGATCAAAGTTTTCGGGTCGAGCGAAGGCAGCCCAGAATCTGACGTCAGGGCCTTTGGGGTTTTGATCATGCATCTCCTAACTGGAAGAAACTGGGGTGGTCTAGTTGAGGAGGAGATGATGATGGGAGGTGGGTCTTTGGTGAGGGTTCTTGATGAGAGTGCCGGGTCATGGCCATTGAATGTTGCCCAAAAGCTAGCGGACCTAGCCGTGAAGTGTATGGGCCTTCCCAATGGGCCGAAGCCCAAAGAAGGATTAAGCATTGGGGATGCAATGGTGGAACTAAATGAAATAAGAAGAGAGGCCACGGCCAATGAGGAAGTTGCAAGAGGAGACACGTGTGGAGGTGTAGGTAAAGAAGAGTTGGTGGATGTGCCCAATGTGTTTCTATGTCCTATATTTCAGGAGGTGATGAAGAACCCACACGTGGCAGGAGATGGGTTTTCGTATGAATTAGAAGCAATAGAAGAATGGGTTGGTTCAGGGCATGATACATCGCCAATGACCAATGTGAGACTGCCTCACTTGTTGTTTACCCCTAATCACTCCCTTCGTTCTTTAATTCAGGACTGGCAAACTAAACCATCTTCTTAA 2430 0.4395 MEATTTQTEKIYVAVSNDLQDGIKTLNWALHKWKSHPISIVILFVNHNTSKDLVQTPFGKLPARSVNDEMLPAFRKQEQDKIDKLLSKYTSFCDKVPFETLEVEKLDEPIQKRIVDMIIGQEITKLVIGFSVMKPSWKSQGAINGFFYIHQHKPEYCELFILCGGKQVFMRGQNDEKIMEDDNGVVVARVRDKKTFKDWLEKVFPNNIDFPDYRISPRPAASNSSSLSASMASTGSLQSQWEVHLQEIETYFQDLCSSNMNIDEQIGLEEQDSDVSRINGIQLDDVRQQNNSKLKRIESLQGKLEEARKMIQLKRKEAKDQSDRQAKAEWAICLSNARAQDLEGKINEEMNMKEELAKELEAEKETIYEIRRDIEESRKRLSSLLELQLELSNKLQISTQAKSQAEIQLENAAYIRSAMMADIDKLRRERDVFYRRIEFCKDKDAIGMAAKLIEPSLSFREYTMDEIRLATDDFSDRLMLKSGGADRTHVYRGKIHHSTVAIKMLNSNHYCSPQDLQAKVRLLGGIRHPHVVALVGFCTELECIVLEYMNNGSLRDMLFSRRRNRALRWQDRIRISTEVCSGLGFLHSAQPRPFIHGHLTPSSILLDRNLVAKIKVFGSSEGSPESDVRAFGVLIMHLLTGRNWGGLVEEEMMMGGGSLVRVLDESAGSWPLNVAQKLADLAVKCMGLPNGPKPKEGLSIGDAMVELNEIRREATANEEVARGDTCGGVGKEELVDVPNVFLCPIFQEVMKNPHVAGDGFSYELEAIEEWVGSGHDTSPMTNVRLPHLLFTPNHSLRSLIQDWQTKPSS 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1168 809 Pfam Protein tyrosine and serine/threonine kinase 487 618 IPR001245 GO:0004672|GO:0006468
Acco11g1168 809 ProSiteProfiles Protein kinase domain profile. 476 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1168 809 PANTHER OS02G0152300 PROTEIN 11 802 - -
Acco11g1168 809 CDD RING-Ubox_WDSUB1-like 738 793 - -
Acco11g1168 809 ProSiteProfiles U-box domain profile. 736 809 IPR003613 GO:0004842|GO:0016567
Acco11g1168 809 SMART Ubox_2 740 803 IPR003613 GO:0004842|GO:0016567
Acco11g1168 809 Gene3D Transferase(Phosphotransferase) domain 1 549 625 - -
Acco11g1168 809 Gene3D Phosphorylase Kinase; domain 1 450 548 - -
Acco11g1168 809 Pfam U-box domain 737 805 IPR003613 GO:0004842|GO:0016567
Acco11g1168 809 Coils Coil 339 380 - -
Acco11g1168 809 SUPERFAMILY Protein kinase-like (PK-like) 456 686 IPR011009 -
Acco11g1168 809 SUPERFAMILY RING/U-box 732 806 - -
Acco11g1168 809 Coils Coil 283 324 - -
Acco11g1168 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 808 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1168 Acco-ChrAcco11 24884898 24890283 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1168 6 809 U-box Gene Family AT5G65500 45.466 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Acco11g1168 PK_Tyr_Ser-Thr 2e-21 CL0016