Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1159 ATGGGTCGAAGAAAATTAACGATGAAAACCCTCAAGAATAGGAATGCTCGCAGGGCGTTGTTTGAGAGGAGAAAGAAATGTTTATTGAAGAAGACTTCTGAACTTTCCACCCTCTGTGGAATTGATGCTTGTGTGATAATTTTCCCTCCTCCAGATTGTGAAAACTCTAGAGCTGAAACCTTTCCTCAAGATCCCACCCAAGTGATTCGAAATATTCAAATGTATAATGCCAAAAAGAACTGCCCTGAGAAACAGAGGAAGAACTACGATCTCCATGAGTTCTTCAATGATAGGAAGAGTCAGGTTGAAGCTGAGACCTCCAGAGTTCGTGAACAGAAACTCAAGATGATGTGTTCAACGGACAACAGCTTCCACAACCTGAGAGAGGATCAACTGAGGAAGTTAATTTCTGTACTGGATTCTAAAATTCAAGAATGTGATGATACAATTGAACTGTTAAAATTAAAAGCAAAGAAATTAGAGATGCCTGCGGTTCCAATGGGTTTGGACCCGTTGGGTTATCATTGTTTGGAGATTCCTGTTGCTGTAATTCCTACCCATGCGCAGTATACGAGTGAAGAGGCCAACGTTGTTACTCTCTCAGATCCAATGATGGAGCTTTTTGGTGATAACAACACTGACCTCATGGATGACCAGACGCTTGGTTTTGGATTAGAGGATATTGATTTAGATATGCTTTTAGGCTTAGGGTGGGATTAG 720 0.4111 MGRRKLTMKTLKNRNARRALFERRKKCLLKKTSELSTLCGIDACVIIFPPPDCENSRAETFPQDPTQVIRNIQMYNAKKNCPEKQRKNYDLHEFFNDRKSQVEAETSRVREQKLKMMCSTDNSFHNLREDQLRKLISVLDSKIQECDDTIELLKLKAKKLEMPAVPMGLDPLGYHCLEIPVAVIPTHAQYTSEEANVVTLSDPMMELFGDNNTDLMDDQTLGFGLEDIDLDMLLGLGWD 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1159 239 CDD MADS 2 50 - -
Acco11g1159 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Acco11g1159 239 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Acco11g1159 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco11g1159 239 PANTHER MADS BOX PROTEIN 3 146 - -
Acco11g1159 239 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Acco11g1159 239 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Acco11g1159 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco11g1159 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco11g1159 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1159 Acco-ChrAcco11 24833279 24833998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1159 1 74 Type I MADS-box Gene Family AT3G05860 42.105 4.42e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco11g1159 SRF-TF 1.2e-13 No_clan