Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1147 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACACTACGGCGAGGCAAGTTACGTTCTCCAAGCGACGAAGAGGGCTCTTCAAAAAAGCTGAGGAGCTTTCTGTCCTCTGTGATGTCGATGTTGGCCTCATCGTCTTCTCCTCAGCTGGCAAGCTCTCTGAGTTCTCCAGCACCAGCATGAATGAGATACTCAACATGTATCATTTGCATTCGAAGAACCTATCAAAACAAGAACCGCCATCTCTTGAATTGCAGCTCGTTAAGAACAGTAATTACTCCAGCTTGAGCAAGGAAGTTGCTGAGAAGAGCCGTCAACTAAGGCAGATGAGAGGAGAAGATCTGCAAGGTTTAAATATCCAGGATTTGGAGGAACTAGAGAGGTCTCTCGAATCTGGATTGGGCCGTGTAATAGAAATGAAGGAAGAGAAGATAATGACCGAGATCACTGACCTCAAGAGAAAGGGAGTGGAGTTGATGGAAGAAAATGATCTGTTAAAGCGTCAAGTGGAACAATTAGATGATGGCTTTAGGCAAGGTGGTGCCTCCGAGTCGGACGTCGTGAATAATGAGGAAGGCCAGTCATCAGAATCTGTCACTATCATCTGCAACTCCTCCGGACCCCCTCAAGATTATGACAGCTCAGACACATCGCTTAAGCTGGGGTGA 672 0.4658 MAREKIQIKKIDNTTARQVTFSKRRRGLFKKAEELSVLCDVDVGLIVFSSAGKLSEFSSTSMNEILNMYHLHSKNLSKQEPPSLELQLVKNSNYSSLSKEVAEKSRQLRQMRGEDLQGLNIQDLEELERSLESGLGRVIEMKEEKIMTEITDLKRKGVELMEENDLLKRQVEQLDDGFRQGGASESDVVNNEEGQSSESVTIICNSSGPPQDYDSSDTSLKLG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1147 223 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco11g1147 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco11g1147 223 FunFam Transcription factor, MADS-box 13 83 - -
Acco11g1147 223 Coils Coil 124 144 - -
Acco11g1147 223 Gene3D - 13 110 IPR036879 GO:0003677|GO:0046983
Acco11g1147 223 MobiDBLite consensus disorder prediction 177 223 - -
Acco11g1147 223 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Acco11g1147 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco11g1147 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco11g1147 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco11g1147 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco11g1147 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco11g1147 223 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Acco11g1147 223 Coils Coil 94 114 - -
Acco11g1147 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 186 - -
Acco11g1147 223 Coils Coil 150 170 - -
Acco11g1147 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco11g1147 223 MobiDBLite consensus disorder prediction 184 223 - -
Acco11g1147 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1147 Acco-ChrAcco11 24733493 24739214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1147 1 223 MADS-box Gene Family AT2G22540 60.426 5.81e-95 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco11g1147 K-box 1.1e-16 No_clan