LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g1112	ATGGAAGAAGCTTTTAGGCGTCTCAATAGCCTCAATCCCCAAGACTCATTCTCCGATCACCTCAACAAGAAGTGCCCCTCCGCCGCCAATAAGAGGGCTTCCAGAGATAACGGCGCCGGCGGTGTAAGGTACCGTGGAGTTAGGCGTAGGCCCTGGGGCCGTTACGCCGCCGAGATAAGGGACCCACTGTCCAAGGAGCGGCGTTGGCTCGGTACCTTCGACACGGCGGAGGAAGCTGCCTGTGCCTACGACTGCGCCGCCCGAGCCATGCGTGGCCTTAAAGCTCGCACCAACTTTGTATACCCAAATCCCACTTCTTCGCTTTACTCTCTTCCTTATAATCTCTTGCCTCCTATCAACTTTCTCAAACAATCTCAGACGACGTCGTCCCTTAACATTAACAAGAACCTCCATAACCACCACCACGTGGGAGCTTCTAAGTGGTCCAACCCTCGTCCCTATTGTTCAACCCTCCACCACCGAAACTCAACCTCGAACATCATTATGCACCCTTCTGTGGTTCCTCCCTCTTCGTCGTCGTCATCCTCGTCCACCTGTGCCACGTGTACTTGTTGCCGACGTTGCTATTTGATGAATTCTTCTGGTGATGGTGGCACTAATTCTTCTGCTTCCGTCTCGATGACCACCACAACCCATCAAAATGGAATAATGACCAAGAGTGGTGATTGTGAAGCAGTTGGTGAATTTGGGTACTTTCCAAGAGAATCTTCAGACTCAGGGTTGTTGGAGGAGATTGTTCATAAATTTATGTTAACTTCAAAGCCCAAGAAACTTGAGACTACTCCAGAATTACCACCTCAGATTCAACCTCAGCCTCAGTTAGTGCCTAATCCTACGTTTGTTTCTGCTTCTCAATGCTATTTCGAAAACAAAAAAGAGAATTTTGGTGTTTGTAATTTGGACAGCGACCAAGGTTTTCTTCCCATGCAACAACAACAGTTTGAGGGTTTTGATGATGAGCAGGCTATGCATTTTGGCAACGGTCAACAGTTCATGATGATGAACCATGCAGATTTCTCAATCACGCAAGATCTTGTTCGTTATCAAGAGATTTTGAATGCCTTCGCAGCCAGCGTCCAAAATGCTTAA	1110	0.4811	MEEAFRRLNSLNPQDSFSDHLNKKCPSAANKRASRDNGAGGVRYRGVRRRPWGRYAAEIRDPLSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPNPTSSLYSLPYNLLPPINFLKQSQTTSSLNINKNLHNHHHVGASKWSNPRPYCSTLHHRNSTSNIIMHPSVVPPSSSSSSSSTCATCTCCRRCYLMNSSGDGGTNSSASVSMTTTTHQNGIMTKSGDCEAVGEFGYFPRESSDSGLLEEIVHKFMLTSKPKKLETTPELPPQIQPQPQLVPNPTFVSASQCYFENKKENFGVCNLDSDQGFLPMQQQQFEGFDDEQAMHFGNGQQFMMMNHADFSITQDLVRYQEILNAFAASVQNA	369

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g1112	369	SMART	rav1_2	43	106	IPR001471	GO:0003700\|GO:0006355
	Acco11g1112	369	Gene3D	AP2/ERF domain	42	101	IPR036955	GO:0003700\|GO:0006355
	Acco11g1112	369	MobiDBLite	consensus disorder prediction	9	23	-	-
	Acco11g1112	369	Pfam	AP2 domain	43	92	IPR001471	GO:0003700\|GO:0006355
	Acco11g1112	369	ProSiteProfiles	AP2/ERF domain profile.	43	100	IPR001471	GO:0003700\|GO:0006355
	Acco11g1112	369	MobiDBLite	consensus disorder prediction	1	43	-	-
	Acco11g1112	369	PRINTS	Ethylene responsive element binding protein signature	66	82	IPR001471	GO:0003700\|GO:0006355
	Acco11g1112	369	PRINTS	Ethylene responsive element binding protein signature	44	55	IPR001471	GO:0003700\|GO:0006355
	Acco11g1112	369	FunFam	Ethylene-responsive transcription factor 2	43	101	-	-
	Acco11g1112	369	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	30	215	-	-
	Acco11g1112	369	SUPERFAMILY	DNA-binding domain	43	100	IPR016177	GO:0003677
	Acco11g1112	369	CDD	AP2	51	99	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g1112	Acco-ChrAcco11	24090647	24091756	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g1112	1	174	AP2-EREBP Transcription Factor Family	AT1G24590	45.960	2.33e-41	145

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Acco11g1112		AP2	9.7e-12	CL0081