Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1091 ATGCCCAGCCTGCCACCCCATAAAACCCGAGCTCAACTAACTAAACACATAATAATATCAAATTCGTTCATGATCATCAAGGCCCAAACCTTTGACAAAGAACCCATGAATTGCTCTGCAACTATCTCCCATTGCAATGCCTCGTTATATCACATCACCAAGGATGATAATCTCTCCTCCATAGAAGACATCGCGTCGCGCTACTCCGTCAACGTGTCGAATTTGAAGCCCATAAGGCATCCCAACAATGAAAAAGACGATTACCTAGTTACTGTGCCCTGTACTTGCCTAAATACTAGTGAGCTTAGTGGGTACTTCTATGAAACGACCTACACAGTGTATCCAAATGACAGCGAGCAGAATATTTCAAATAATGTTTATAGTAGGCAAACATGGATTCTGGGAAATCATAGCCTTTTGAAAATAAGTGAGGCTTTAACAATATATCTTCTCTGTGGGTGTTCCAAGGAGAGTGAATCTGATGAGATTGTTGTGACGTACACGGTGCAGAAGGACGAAACGCTCTTCACAATTGCTAGTCTTCTGAGCTCTACACTGGAAAAAATGAAGAACTCGAATAGGATTTTGAATTCAGATGGATCGTTTATTGATGTGGGGTGGGTTCTATTTATTCCCAGTCACTTAAATGGCATTGGTAAAGGAAACAAGAGTACCAAAATTAAATTAGTGGTTGGCATATTAGCAGGTTTAGTGGCATTGCTTTTGTTACCCACAGCGCTTATACTCATTGTTAGGAGAAAAAAACGCAAAGGGGCATCTAAAAAATCAGTTTCCGATAGAACTCCTTCAGACCCCTTTCATAAAAAGATTGTAAAAGATGAAACACCATTTGAATCAGAAAAACCAGCAATATTTAGTCTTGAAGAGATTGAAGAGGCTACCGATTACTTTGATGAAACCAGAAAAATTGGAGTTGGTGGATATGGAAGTGTGTATTTTGGAGTCATGGGAAAGAAGGAGGTTGCAATAAAGAAGATGAGATCTAATAAATCCAAAGAGTTCTATGCCGAACTCAAGGTCATATGTAAGATCCATCATATCAACATTGTAGAGCTGTTAGGATATGCCAGTGGAGAAGACCACCTCTACTTGGTGTATGAATATGTTGCAAATGAATCTCTCAGTAATCATCTTCACGATCCATTACTAAGAGGAAACGTGGTGGCAGATTTTGGATTTGCAAAGCTGGTGGAACGAACAAATGATGAAGATCCTAATATAGCAACAAGGCTTGTTGGAACACCTGGCTACCTTCCACCAGAATCTGTGAAAGAGCTTAAGACGACTCCAAAAACTGATGTGTTTGCTTTTGGAGTGGTTCTGTCAGAGCTGGTAACAGGCAAGCGTGCTTTATTTCGTGACAGCCTAGAGGCCAACAAAATGAAATCCCTTATTACAGTTGTCAATAAAATATTCGAAGATAATGACCATGAGACTGCTCTAGCAAATGTCATAGATCGGAACCTCCAAGGTTGCTATCCTCTTGAGGATGTATTCAAGATGGTAGTGTTAGCTGAGAGATGTTTAAGGGAAGATCCATTGGAGAGGCCAAAAATGAGGCAGGTGGTTGAAGCACTGTCACATCTCACGATGTCGTCCATGGAGTGGGAAGCTTCACTTGGAGAGAAGAGTGACGTCTTCAACGTCGTATGTGAAGCAAGATGA 1686 0.4081 MPSLPPHKTRAQLTKHIIISNSFMIIKAQTFDKEPMNCSATISHCNASLYHITKDDNLSSIEDIASRYSVNVSNLKPIRHPNNEKDDYLVTVPCTCLNTSELSGYFYETTYTVYPNDSEQNISNNVYSRQTWILGNHSLLKISEALTIYLLCGCSKESESDEIVVTYTVQKDETLFTIASLLSSTLEKMKNSNRILNSDGSFIDVGWVLFIPSHLNGIGKGNKSTKIKLVVGILAGLVALLLLPTALILIVRRKKRKGASKKSVSDRTPSDPFHKKIVKDETPFESEKPAIFSLEEIEEATDYFDETRKIGVGGYGSVYFGVMGKKEVAIKKMRSNKSKEFYAELKVICKIHHINIVELLGYASGEDHLYLVYEYVANESLSNHLHDPLLRGNVVADFGFAKLVERTNDEDPNIATRLVGTPGYLPPESVKELKTTPKTDVFAFGVVLSELVTGKRALFRDSLEANKMKSLITVVNKIFEDNDHETALANVIDRNLQGCYPLEDVFKMVVLAERCLREDPLERPKMRQVVEALSHLTMSSMEWEASLGEKSDVFNVVCEAR 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1091 561 Pfam LysM domain 167 212 IPR018392 -
Acco11g1091 561 SUPERFAMILY LysM domain 165 212 IPR036779 -
Acco11g1091 561 ProSiteProfiles LysM domain profile. 165 211 IPR018392 -
Acco11g1091 561 Gene3D Transferase(Phosphotransferase) domain 1 380 556 - -
Acco11g1091 561 SMART LysM_2 166 212 IPR018392 -
Acco11g1091 561 Pfam Protein kinase domain 395 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1091 561 Pfam Protein kinase domain 305 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1091 561 FunFam Kinase family protein 277 375 - -
Acco11g1091 561 ProSiteProfiles Protein kinase domain profile. 304 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g1091 561 CDD LysM 165 211 IPR018392 -
Acco11g1091 561 SUPERFAMILY Protein kinase-like (PK-like) 289 536 IPR011009 -
Acco11g1091 561 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Acco11g1091 561 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 28 388 IPR044812 GO:0019199|GO:0045087
Acco11g1091 561 Gene3D Phosphorylase Kinase; domain 1 274 375 - -
Acco11g1091 561 Gene3D LysM domain 165 212 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1091 Acco-ChrAcco11 23620973 23627904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1091 284 561 Receptor kinase-like Gene Family AT1G51940 38.554 1.50e-72 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Acco11g1091 Pkinase 1.9e-16 CL0016