Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1072 ATGGTTAAAGCGGTGGCCGCTGTGGCGGAGCCCAAGATAAGGTACGCGACGTTGTGTTTCGTGGTGCTTGCTTGCTTCCTGCCAATGGAGGAAATGTACGGTCTCCCGTCCTTCCCTGTGGATTTTTCCGACAAAGCCATCATGTCGCCGGAGAATCTGATTTTCCCCGCCGACTATCAGAGCTTCCTCATGTTTTCCTCCGCTGCCACCGCACCACCTGGCTTTCGTGATCGAATTTTAGGATCTGATGAGTTGCTTTCCGCTGCATCCGCGACTACGGAAGCCGAAGCCGAAGCCTCCGGCGCGGCTGCTCCGGAATTTCGGCCACAAGAGGATGACGACTCTTACTCTGCCATCAAAGCTAGAATTGCATCTCATCCTCACTATCCTCGTCTCATTCAAGCCTATATCGATTGCCAGAAGGTAGGAGCACCACCAGAAATAGCGTGTTTGTTAAGAGAAATCCAGCAACAAAACAATGTTAGCAAGAGGGATGTTATTTCCATGCGCTATGGAGACGACCCCGACCCCCAGCTCGATCAGTTCATGGAAACCTACTGCCACGTGCTGTTGAAGTGTAAATCAGATCTTGCTCGGCCTTTTAATGAAGCAACCTCTTTCCTCAACCAGATCGAAACCCAGCTCAGTAATCTCTGTGCCGGGGCTTCCGTTCTAAGCCTTTCCGATGATAGGGGTGTGTCTTCGGAAGAAGATTTCAGTACTATTGAAGGTGGAGACAATCAGGCCAAGGGTGAAGAGCAAGAGCTTAAGGATATGCTTTTACGTAATTTTGGGGATCGTATTGGCTCTTTGAAGTTGGGATTTTCTAAGAAGAAGAAGAAAGGTAAGCTTCCCAAAGAAGCCAGCCAAGCTCTGTTTCAGTGGTGGACTGCTCACTTCAACTGGCCATACCCAACGGACTCTGAAAAGATAGCTCTGGCCAAGTCAACGGGTCTAGACCAGAAGCAAATAAACAATTGGTTTATTAATCAGAGAAAGCGCCACTGGAAGCCATCTGAAAACATAAGCGCCTAA 1035 0.4908 MVKAVAAVAEPKIRYATLCFVVLACFLPMEEMYGLPSFPVDFSDKAIMSPENLIFPADYQSFLMFSSAATAPPGFRDRILGSDELLSAASATTEAEAEASGAAAPEFRPQEDDDSYSAIKARIASHPHYPRLIQAYIDCQKVGAPPEIACLLREIQQQNNVSKRDVISMRYGDDPDPQLDQFMETYCHVLLKCKSDLARPFNEATSFLNQIETQLSNLCAGASVLSLSDDRGVSSEEDFSTIEGGDNQAKGEEQELKDMLLRNFGDRIGSLKLGFSKKKKKGKLPKEASQALFQWWTAHFNWPYPTDSEKIALAKSTGLDQKQINNWFINQRKRHWKPSENISA 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1072 344 Pfam KNOX2 domain 176 219 IPR005541 GO:0003677|GO:0005634
Acco11g1072 344 ProSitePatterns 'Homeobox' domain signature. 313 336 IPR017970 GO:0000981|GO:0006355
Acco11g1072 344 SMART HOX_1 277 342 IPR001356 GO:0003677
Acco11g1072 344 CDD homeodomain 287 339 IPR001356 GO:0003677
Acco11g1072 344 ProSiteProfiles 'Homeobox' domain profile. 275 338 IPR001356 GO:0003677
Acco11g1072 344 SMART KNOX1_2 117 161 IPR005540 GO:0003677|GO:0005634
Acco11g1072 344 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 102 342 - -
Acco11g1072 344 Gene3D - 274 344 - -
Acco11g1072 344 Pfam KNOX1 domain 118 159 IPR005540 GO:0003677|GO:0005634
Acco11g1072 344 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Acco11g1072 344 SMART KNOX2_2 169 220 IPR005541 GO:0003677|GO:0005634
Acco11g1072 344 SUPERFAMILY Homeodomain-like 276 339 IPR009057 -
Acco11g1072 344 Pfam Homeobox KN domain 295 334 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1072 Acco-ChrAcco11 23263151 23272318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1072 29 342 Homeobox Transcription Factor Family AT1G23380 57.055 4.27e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Acco11g1072 KNOX2 1.3e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g1072 11 23263151 23272318 Acco12g0643 12 5876181 5882527 CCT
Acco11g1072 11 23263151 23272318 Acco11g1072 11 23263151 23272318 ECH