Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco11g1064 | ATGTACCGTCAGGAGAGAGCAACAATGCAAATCTTCGTGAAAACCCTCACGGGGAAGACGATAACCCTCGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGAACCCTAGCGGACTACAATATCCAGAAGGAATCCACCCTCCATTTGGTGCTCCGACTCCGTGGTGGCGCTAAGAAGAGAAAGAAGAAGACCTATACCAAGCCCAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCGGTCCTCCAGTTCTACAAGGTCGATGATTCCGGTAAGGTCCAGAGGCTGAGGAAGGAGTGCCCCAATGCGGAGTGTGGTGCTGGGACTTTCATGGCCAATCACTTCGACCGACACTACTGCGGCAAGTGTGGAACGACTTATGTCTACAATAAGGGTGGTGATTAG | 492 | 0.5285 | MYRQERATMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGTTYVYNKGGD | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco11g1064 | 163 | Pfam | Ribosomal protein S27a | 110 | 155 | IPR002906 | GO:0003735|GO:0005840|GO:0006412 | |
| Acco11g1064 | 163 | SMART | Ribosomal_S27_2 | 110 | 155 | IPR002906 | GO:0003735|GO:0005840|GO:0006412 | |
| Acco11g1064 | 163 | Pfam | Ubiquitin family | 11 | 82 | IPR000626 | GO:0005515 | |
| Acco11g1064 | 163 | ProSiteProfiles | Ubiquitin domain profile. | 9 | 84 | IPR000626 | GO:0005515 | |
| Acco11g1064 | 163 | FunFam | Ubiquitin-40S ribosomal protein S27a | 9 | 87 | - | - | |
| Acco11g1064 | 163 | ProSitePatterns | Ubiquitin domain signature. | 35 | 60 | IPR019954 | - | |
| Acco11g1064 | 163 | PRINTS | Ubiquitin signature | 61 | 82 | IPR019956 | - | |
| Acco11g1064 | 163 | PRINTS | Ubiquitin signature | 40 | 60 | IPR019956 | - | |
| Acco11g1064 | 163 | PRINTS | Ubiquitin signature | 19 | 39 | IPR019956 | - | |
| Acco11g1064 | 163 | SMART | ubq_7 | 9 | 80 | IPR000626 | GO:0005515 | |
| Acco11g1064 | 163 | SUPERFAMILY | Ubiquitin-like | 4 | 85 | IPR029071 | - | |
| Acco11g1064 | 163 | CDD | Ubl_ubiquitin | 9 | 84 | - | - | |
| Acco11g1064 | 163 | Gene3D | - | 1 | 86 | - | - | |
| Acco11g1064 | 163 | SUPERFAMILY | Zn-binding ribosomal proteins | 108 | 160 | IPR011332 | GO:0006412 | |
| Acco11g1064 | 163 | Gene3D | - | 87 | 163 | IPR038582 | - | |
| Acco11g1064 | 163 | PANTHER | UBIQUITIN | 9 | 97 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Acco11g1064 | Acco-ChrAcco11 | 23058094 | 23059647 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco11g1064 | 9 | 161 | Cytoplasmic Ribosomal Protein Gene Family | AT1G23410 | 92.157 | 6.45e-91 | 259 |