Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1039 ATGGTTTCTCATGCAAAGGAATGTGGTGCTTGTCTGTATGGGAATTTGTATAGCCAAGGTTATGGAACAAACACAGCTGCTTTGAGCACAACTCTGTTCAACAATGACCTGAACTGTGGCTCTTGCTTTGAGATTAAGTGTGCGAATGATGCTAAATGGTGCATACCTAGCTCCATTATGGTCACAGCCACCAATTTCTGTCCTTCAAACAATGCCTTACCCAACAATGCCGGCGGCTGGTGCAACCCGCCCCCTCCCCCCAAACACTTTGACCTTGCCCAGCTCGTTTTGCTCCCCATTGCCCAGTACAGAGCCAGACTGGTGGCCTACCGGAGGGTGTCTGGTAGGAGAAAGGGAGGTATCAAGTTCGCAGTCGATGGGCACTCGTACTTCAACCTAGTCCTCATCACCAAGTGGGCGGCGCTGGAGATGTTAATGCGGTGGCTCTGA 450 0.5111 MVSHAKECGACLYGNLYSQGYGTNTAALSTTLFNNDLNCGSCFEIKCANDAKWCIPSSIMVTATNFCPSNNALPNNAGGWCNPPPPPKHFDLAQLVLLPIAQYRARLVAYRRVSGRRKGGIKFAVDGHSYFNLVLITKWAALEMLMRWL 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1039 149 SMART dpbb_1 25 110 IPR007112 -
Acco11g1039 149 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 8 120 IPR007112 -
Acco11g1039 149 SUPERFAMILY Barwin-like endoglucanases 9 137 IPR036908 -
Acco11g1039 149 Pfam Lytic transglycolase 25 108 IPR009009 -
Acco11g1039 149 PANTHER EXPANSIN-A15 8 138 IPR002963 GO:0009664
Acco11g1039 149 Gene3D - 2 115 IPR036908 -
Acco11g1039 149 PRINTS Expansin signature 59 69 IPR002963 GO:0009664
Acco11g1039 149 PRINTS Expansin signature 78 95 IPR002963 GO:0009664
Acco11g1039 149 PRINTS Expansin signature 131 149 IPR002963 GO:0009664
Acco11g1039 149 PRINTS Expansin signature 47 58 IPR002963 GO:0009664
Acco11g1039 149 PRINTS Expansin signature 20 34 IPR002963 GO:0009664
Acco11g1039 149 PRINTS Expansin signature 119 131 IPR002963 GO:0009664
Acco11g1039 149 PRINTS Expansin/Lol pI family signature 7 25 IPR007118 GO:0005576
Acco11g1039 149 PRINTS Expansin/Lol pI family signature 29 47 IPR007118 GO:0005576
Acco11g1039 149 PRINTS Expansin/Lol pI family signature 103 119 IPR007118 GO:0005576
Acco11g1039 149 CDD DPBB_EXPA_N 9 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1039 Acco-ChrAcco11 22784148 22786065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1039 9 138 Expansin Gene Family AT1G69530 74.242 2.66e-67 202