Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1030 ATGAGTAAGATTCCCACTGCTGAAGATATGATTCTGATTAGAATCAAATTTGCAGTATTAGGAAGAGACGCAGAAATGCCAGGCTTGGAGGTAGCAGCAGTGGAGGGATTCAGGACCTTGACTGAGACTAAAGCTTGGGACTATGTGGTAGTATGGAAGTATAGCGATGACCCAACAAGATTTATCGAGTGGATGGGCTGTTGCTGTGTTGGGGGATGTAATGGAAGCAAGAATGAAGAGGAAAAGGAGGAAGAATATAGATTGAGTCGTAGATGTAGGGATAGTAGCTTTCAGCATCCAGTGAGAACCAAGGCTTGTGAGGCTCTTGCTCTACTTCCTTATACTATACCACTTTATTCTGGTGTTCATGGAGATGTGGCAATATCAAAACAACCTCAATGGCTTATCCAGGATTCAACAGGAACTCAAATTTTGATCCCTATTATTGGTGGTATTATAGAGCTCTTCACAGCAAAGATGGTGCCAAAAGATTCAAGGATCATAGAGTCGATAACTGCACATTGTTGTCTCTCTATGAAAAATGAAGCCATCCCTGAACATCCACCACTAGATACATGCTATCCACAAAGCTTAATTTCTAGCATACATACATCTGCAGTAGAGCAGTGCAGCTCTCATCCAAGCATTGAAGGATCCTCCAGTGGATCAAATCCTTCAAGTGAGACTTCAAAAGAGCATCAAACAGGTTTCGATTTCCAGTGTGGCATTCTGGAAGAAGATAAACCAAAGTTGGTCAAGAGACCTCAAAGGGAAGGCTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATCAAAGATGGGCTTTACACTCTACGAGCTTTGGTCCCAAAGATAACAAAGATGGATAGGGCATCCATTGTTGGAGATGCCATTGATTATATAAAGGAACTGCAGGAACAAGAAAAAGGGCTTAGAGATGAGTTGACAGCTTTGGAAGAAGAGAATTGTGAAAAGAACAAACAAAAGTCAAGGAGGTCCATATCGAAGGAACAAGGAGGAACCGGAAGTTTGCATCTTGATCATCTCATCCAAAGTTCCTCTGATTCCAAAAAAAAGACCCACATGGAGGTAGAAAAGAGAGTGCAGGTTGAAGTAAACCAGATTGGGAAGATAGAATTTCTTGTGAAGATGCGTTGTGAGCAGAAGAGAGGAGGGTTTGCAAGATTGATGGAGGCTATTCATTTGTTTGGACTGCAGGTAACTGATGCTAATGTGAACACATTTGGTGACAAAGTCATGAATATTCTGACTGTTAAGGCAAACAAGCTTGATATTCACCCAGACATATTGGGAGAGTATTTAACTCAGCAAGCTGGTTCTCAAGAAAGAGGAGTTGATGTTGAGGTCAAGAAAGCTTAA 1392 0.4138 MSKIPTAEDMILIRIKFAVLGRDAEMPGLEVAAVEGFRTLTETKAWDYVVVWKYSDDPTRFIEWMGCCCVGGCNGSKNEEEKEEEYRLSRRCRDSSFQHPVRTKACEALALLPYTIPLYSGVHGDVAISKQPQWLIQDSTGTQILIPIIGGIIELFTAKMVPKDSRIIESITAHCCLSMKNEAIPEHPPLDTCYPQSLISSIHTSAVEQCSSHPSIEGSSSGSNPSSETSKEHQTGFDFQCGILEEDKPKLVKRPQREGYTSKNLVTERNRRNKIKDGLYTLRALVPKITKMDRASIVGDAIDYIKELQEQEKGLRDELTALEEENCEKNKQKSRRSISKEQGGTGSLHLDHLIQSSSDSKKKTHMEVEKRVQVEVNQIGKIEFLVKMRCEQKRGGFARLMEAIHLFGLQVTDANVNTFGDKVMNILTVKANKLDIHPDILGEYLTQQAGSQERGVDVEVKKA 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1030 463 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 38 172 IPR025610 -
Acco11g1030 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 327 IPR036638 GO:0046983
Acco11g1030 463 MobiDBLite consensus disorder prediction 326 350 - -
Acco11g1030 463 Gene3D - 253 326 IPR036638 GO:0046983
Acco11g1030 463 Coils Coil 305 325 - -
Acco11g1030 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 259 308 IPR011598 GO:0046983
Acco11g1030 463 MobiDBLite consensus disorder prediction 210 234 - -
Acco11g1030 463 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 167 436 - -
Acco11g1030 463 SMART finulus 265 314 IPR011598 GO:0046983
Acco11g1030 463 Pfam Helix-loop-helix DNA-binding domain 267 309 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1030 Acco-ChrAcco11 22494768 22497121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1030 116 447 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 31.933 1.18e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco11g1030 bHLH-MYC_N 5.5e-15 CL0161