Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0994 ATGGCGCACGCTGCTCGACTCCCCTGCGATTGTGATGGTCTCTGTATGATCTGCAAGACAAAGCCCGCAGAGGAAGAAAAACTGACTTGCAAAACCTGTGTTTCCCAATGGCATGTCAACTGTCTCTCTCACCGTCCGGAGACGATGGCGGAGACGCTTCAGTGGGAATGCCCTGATTGTTCTACCCCACCTTCCGATTTCCCCTCGGCGAACGTTGGGAAAGCCGTCCTTGATGGTGCCGGTGACTTGATGGCGAAGATCCGTGCGATTGAGGCCGATGATTCTCTGAGTGAGCTTGAAAAGGCTAAGAAGCGCCAAGAACTCTTGAGTGGAAAGGCTGGGCCGGAGGGAGACGAAAGTGGTGGAAAGAAGACGGGGGAAGGTGAAGGAAAGGACGTGTTGGATATTCTTAGCGGGACTCTGAACTGCTCCTTCTGTATGCAGCTTCCCGAGAGGCCGGTCACGACTCCATGTGGCCACAACTTCTGCTTGAAGTGCTTTCAAAAGTGGATTGGACAAGGAAAACTAACATGTGCCAAGTGCCGCAGCGCTATCCCTTCCAAAATGGCAAGTCAACCACGTATAAATGCTGCACTCGTTACTGCTATCCGTATGGCCAAAATATCAAAAAACATAGGTGCAGGAGAAACCTCTAGAGTTTATCATTTTGTGCATAACCAAGATAGGCCAGACAAGGCTTATACTTCAGAGCGGGCCCAAAGGAAGGGCAATTCAAATGCTTGTAGTGGAAAGATTTTTGTAACTGTGCCTCAGGATCACTTTGGTCCAATCCCAGCTGAGAATGATCCAGCGAGGAATCAAGGTGTGCTGGTTGGTGAATGTTGGGAAGATAGACTTGAATGCCGGCAATGGGGTGTTCACTTCCCTCATGTTAGTGGTATTGCTGGACAATCAAACTATGGTGCACAATCCGTAGTTCTTTCGGGTGGTTACGTTGATGATGAGGATCATGGAGAGTATTTTCTTTATACTGGAAGTGGTGGTAGAGATTTAAGTGGAAACAAGCGAACAAATAAATTACAATCATTTGATCAGAAGTTTGAAAAGTACAATTTAGCTTTAAAAGTTAGCTGTTTGAAAGGTTATCCAGTGCGAGTTGTAAGATCTCACAAGGAGAAGCGATCCTCGTATGCTCCCGAGAAAGGATTGCGTTACGATGGAGTCTACAGAATTGAAAAGTGTTGGCGGAAACAGGGAATGCAGGGCTTCAAAGTTTGTCGCTACTTATTTGTTAGATGTGACAATGAACCTGCCCCATGGACAAGTGATGACCATGGAGATCGTCTCCGAGAATTGCCAGTGATACCTGAGTTGAAAAAGGCCACAGACTTGGTGGAAAGGAAGGGGAATCCATCATGGGATTTTGATGTGAAAGAATCTTGTTGGACGTGGAAACTACCACGCCCTGCCAGTCAGAAGCGTGTAAAAAGTGTGGACCCCCTTGAGGTAAAAAGATCGAGGAGGGAAATCAGGAAGGCCCAAAATCTTTCAATCAAGGAAAGACTGCTCAAAGGATTTGGTTGCCTTATCTGTAAAGAAGTTATGGCTTCTCCTGTGACAACACCTTGCGCACATAATTTTTGTAAGTTATGTTTGGAGGGTGCCTTTGCGGGTAAGTCTTTCGTGAGAGAAAGAAGCAGGGGCGGAAGATCTCTGCGGTCCCAAAAGAACATAATGAAATGCCCTTGTTGCCCTACTGACATTTCTGATTTTCTTCAGAACGTTCAGGTCAACACAGAGTTGTTGGGCCTAATCGAATCATTGAAGGCTGAGGCGGCTGAAGAAATTGGAAATGTAAGTGAAGATGAAAATGGAGCAGAGGAGGACTCTGATGATGCTGAGGCTTCAATGGATGAAGATATGGCTACTTCGGTTGAGAAGCTCAATGATTCAGCCGAAGAACCTGATGCTAGCAAACTAGAGACAGAGAAACGCGGAGTGACCAATCGTGCAGCCAAAGATAATTGCAAAAGAAAGAGAGCTGATGCCAAAGAAGTTTCTCCCAAACGTGGCAAAACTAAAAATGCTGAGGATGATGGAAATGATTCACCAGCAAGTCCTCTTCATTTGTCATCAGACCATTAA 2106 0.4625 MAHAARLPCDCDGLCMICKTKPAEEEKLTCKTCVSQWHVNCLSHRPETMAETLQWECPDCSTPPSDFPSANVGKAVLDGAGDLMAKIRAIEADDSLSELEKAKKRQELLSGKAGPEGDESGGKKTGEGEGKDVLDILSGTLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKLTCAKCRSAIPSKMASQPRINAALVTAIRMAKISKNIGAGETSRVYHFVHNQDRPDKAYTSERAQRKGNSNACSGKIFVTVPQDHFGPIPAENDPARNQGVLVGECWEDRLECRQWGVHFPHVSGIAGQSNYGAQSVVLSGGYVDDEDHGEYFLYTGSGGRDLSGNKRTNKLQSFDQKFEKYNLALKVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKQGMQGFKVCRYLFVRCDNEPAPWTSDDHGDRLRELPVIPELKKATDLVERKGNPSWDFDVKESCWTWKLPRPASQKRVKSVDPLEVKRSRREIRKAQNLSIKERLLKGFGCLICKEVMASPVTTPCAHNFCKLCLEGAFAGKSFVRERSRGGRSLRSQKNIMKCPCCPTDISDFLQNVQVNTELLGLIESLKAEAAEEIGNVSEDENGAEEDSDDAEASMDEDMATSVEKLNDSAEEPDASKLETEKRGVTNRAAKDNCKRKRADAKEVSPKRGKTKNAEDDGNDSPASPLHLSSDH 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0994 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 62 IPR013083 -
Acco11g0994 701 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 89 210 - -
Acco11g0994 701 SUPERFAMILY RING/U-box 135 207 - -
Acco11g0994 701 MobiDBLite consensus disorder prediction 604 626 - -
Acco11g0994 701 Gene3D - 242 441 IPR036987 -
Acco11g0994 701 MobiDBLite consensus disorder prediction 603 701 - -
Acco11g0994 701 MobiDBLite consensus disorder prediction 627 686 - -
Acco11g0994 701 ProSitePatterns Zinc finger PHD-type signature. 9 60 IPR019786 -
Acco11g0994 701 SUPERFAMILY FYVE/PHD zinc finger 8 64 IPR011011 -
Acco11g0994 701 SUPERFAMILY PUA domain-like 245 440 IPR015947 -
Acco11g0994 701 SMART PHD_3 14 61 IPR001965 -
Acco11g0994 701 ProSiteProfiles Zinc finger PHD-type profile. 12 63 IPR019787 -
Acco11g0994 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 627 IPR013083 -
Acco11g0994 701 SMART G9a_1 266 423 IPR003105 -
Acco11g0994 701 MobiDBLite consensus disorder prediction 106 131 - -
Acco11g0994 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 209 IPR013083 -
Acco11g0994 701 SUPERFAMILY RING/U-box 509 597 - -
Acco11g0994 701 ProSiteProfiles Zinc finger RING-type profile. 515 571 IPR001841 -
Acco11g0994 701 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 242 437 - -
Acco11g0994 701 ProSiteProfiles YDG domain profile. 271 419 IPR003105 -
Acco11g0994 701 Pfam SAD/SRA domain 273 422 IPR003105 -
Acco11g0994 701 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 5 609 IPR045134 -
Acco11g0994 701 SMART ring_2 515 571 IPR001841 -
Acco11g0994 701 SMART ring_2 15 60 IPR001841 -
Acco11g0994 701 SMART ring_2 143 181 IPR001841 -
Acco11g0994 701 Pfam Zinc finger, C3HC4 type (RING finger) 143 181 IPR018957 GO:0046872
Acco11g0994 701 ProSitePatterns Zinc finger RING-type signature. 530 539 IPR017907 -
Acco11g0994 701 CDD RING-HC_ORTHRUS_rpt1 141 186 IPR047498 -
Acco11g0994 701 ProSiteProfiles Zinc finger RING-type profile. 143 182 IPR001841 -
Acco11g0994 701 Pfam RING-type zinc-finger 515 569 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0994 Acco-ChrAcco11 21910319 21914893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0994 1 596 C2H2 Transcription Factor Family AT5G39550 61.167 0.0 738