Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0908 ATGAAGAGGTCTAGAGACGATGTTTATGTGAGCTCTCAACTCAAACGGCCCATGGTGTCTTCACGAGGGGAAGCCCCGGGGCAACCCCAGATGATAGGTGGAGGTTCTCAGAAACTGACAACTAATGATGCCTTACTCTATCTCAAGGCTGTCAAGGAAATGTTCCATGACAAGAGGGAAAAATATGACGACTTTCTGGAAGTCATGAAAAATTTCAAGGCACAAAGAATTGATACCGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAAGATCTAATTTTGGGATTCAACACCTTCTTGCCCAAAGGATTTGAAATCACGCTTCCACTGGAGGATGAACAACCTCCTCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATTAATTTTGTGAACAAAATCAAGGCTCGATTTCAGGGTGATGATCATGTGTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTATCAAGAGGTTGCTGTTCTTTTCCAAGACCACCAAGACCTGCTTGTTGAATTCACTCACTTTCTTCCAGACGCTTCAGCAGCAGCTTCTGCTCATCATGCTCAATCTGCTCGGAACTCTTTGCTTCGTGATAGGAGTTCTGTAATGCAGGCAGTGGGGCAAATGCGTCCTGACAAGAGGGAAAGGATCATGTCTCATGACCGTGAGCATAGTGTTGATCATCTTGATCCAGATGACAAAGGTTATATGAGGACAGAAAATGAACTCAGAAGGCGTGGTGAGAAGGAAAAGGACCATAGAGAAGATAGAGACAGGAAAGAGCGGAAATATGACGATAGAGCTTATGAGCATGATAACAGTCGGGAATACAACATGAGGAATTTCCCCAACAAACCGAAACATGGTGGTAGGGGTGATGATTTTGGCACCGAACCTCTGCATCAAGGAGGTGATGGTGATGAACATTTTGGTCTGCACAGTATGCCATCGCCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTATAGTCAAGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAACCCTGATGATTATCAGGAATTTTTGAAGTGCCTTCACATCTATAGCAGGGAAATAATTACACGAGAAGAATTGCAGACATTGGTGGGTGATTTACTGGGAAAATATCCTGACCTTTTGGAGGGCTTCAATGAATTTTTGGCAAGATGTGAGAAGAATGATGGATTCCTCGCTGGTGTAATGAATAAAAAATCCTTATGGAATGAAGGTCATGCATCAAAGTCGATGAAGGCAGAAGACCGGGATAGAGATAGAGATCGTGGTCGTGGTCGGGATGATGAGGTTAAAGAAAGGGATCGTGAATATCGAGAAAGGGACAGATCTGCTGCCATTGCCAACAAGGATGCGTTAGGTGCCAGGATGTCTATATTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTATCTAACTGTGAGAAATGCGGTTTTAGTTACCGGCTCCTACCAAAAAATTACCCGATACCTGTGGCTAGCCAGAGAACAGAGCTTGGTGCTGACGTATTGAATGATCATTGGGTGTCTGTGACATCTGGAAGTGAAGACTATTCTTTTAAACACATGCGCAAAAACCAGTATGAAGAGAGCTTGTTTAGATGTGAAGATGACAGATTTGAGCTTGATATGCTGTTAGAGTCCGTGAATGCAACCACAAAACGAGTAGAAGAGCTCCTAGAAAAAATCAATAATAATACAATCAAAGCAGAAAGTTCACTCCGAATTGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTGAGAAAGAATGCACCTTTAGCTTTGCCAGTTATATTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGCTGATTTTAACAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTTGATCATCGAAGCTTCTACTTCAAGCAACAGGACGTGAAAAGCTTGAGCACTAAAGCCTTGTTGGCAGAAATTAAAGAAATTAGTGAGAAGAAACGTAAAGAAGATGATGCTATTCTTGCAATTGCTGCTGGAAATAGACGGCCCATTCATCCAAATTTGGAATACGAGTTTTCTGACCCAGATATTCATGAAGATCTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGTACGACTGAGCAGTTGGATAAAGTTATGAAAATTTGGACAACATTTATAGAGCCCATGCTTGGTGTTCCTTCTCGGCCCCAAGGTGCTGAGGATACAGAAGATGGTGTCAAGGCTAAGAACAATTCCGTCAAAAGTGGTTCTACAATTGCTGTGGAGACTAATGGTAGTCCAGGTAGTGGTGCTACCATAATAAATTCTAAACAATTAAGCACTTCTAGAAATAAGGATGAGAGTAATCCATTAGAACAGTCAAACTCTTGCAAAGCATGGCAAATGAATGGAGATGGTGGGGTTAAAGAAGACAACCGTGTTGATACAGACCATACCTCTTGGAAGACTGAAACTTTAGGCAGCAGTACACAGCTTTGTAAAATGCAAGCTAGTGCCTCCATGCCTGATGGAGGATCAGGGTTCAACAAGCAAGAGCATCCTAATGATCGGTTAGTGAATGCTAGTGCCTCACTTGCCTCTGGAATGGAGCACAGTAATGGAAGAACATGCACTGATAATGCATCAGGGCTTACTCAATCTAGACCCGCTGTTGAGGGAGGACTTAATTTACCTTCATCAGAGGGTGGTGATTCTACTAGACTAGGAGCATCTGCGAATGGGAGCCTCACTGAAGGCACAAAAGTTCAAAGATACCAAGAAGAATCAGTTGGACACTTAAAGGGCGAAAGAGAAGAGGGTGAATTATCTCCGAATGGAGATTTTGAGGAGGATAACTTTCCAGTGTACAGAGATGCTGGTATGGAGGCAACCAGTAAAGGAAAGGATGGTGGTATGGTTCAACAATACCAAAATAGACATGGAGAAGAAGTTTGTGGTGAAGCTGGAGGAGACAATGGTGCTGATGCTGATGATGAAGGTGAAGAAAGTCATCAGAGGTCATTAGAGGACAGTGAAAATGCTTCTGAAAATGGTGACGTTTCTGGTAGTGAGTCTGCTGATGGTGAGTGTTCTCGAGAAGGGCATGAAGATGGTGAACACAAGCCTGAGAGTGAAGGTGAAGCTGAAGGGATGGCCGATGCCAATGATGTTGATGGAGATGGATCTCTGTTGCCATTTTCAGAGCGCTTTCTACTAACCGTAAGGCCTCTGGCAAAATATGTTCCTGCAGCTTTGCATGATAAAGGAGGGAGTTCTCAAATTTTTTATGGAAATGACTCCTTTTATGTGCTTTTTAGACTTCATCAGACATTATATGAGAGGATACAATCAGCAAAGATCAACTCTTCATCTGCCGAAAGAAAGTGGAAGGCTTCAAATGAAACAAATTCTACTGATCAATATGGCAGGTTTATGAATGCCCTTTACAGTTTACTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGACAGTAGGGCTATAATTGGAACTCAATCTTATGTCTTATTTACTTTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCAACTGATGAGATGGATAACAAGCTTCTCCAGCTTTATACGTATGAGAAATCAAGAAAACCAGGAAGATTTGTGGACAGAGTTTACCATGAAAATGCCCGTGTTCTTCTTCATGATGAGAACTTGTATAGGATAGAATGTTCATCTTCCCGATTATCTATTCAACTGATGGACTGTGGACATGATAAGCCTGAATTGACTGCTGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCATAGTGACTTCCTCTCTGTTCCTGAAAAAAAGGAAAGGTCAAGGATTTTCCTAAAGAGGAATAAACGCAAAAATGCACCTAGTGATGAGTATTCAAGCCCAGCCTTGGAAGGACTACAAGTTAGTAATGGTCTGGAGTGTAAAATAGCATGCAGTTCATCCAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTGTTTCGGATGAGTAAGAGAAGGAAAACTTTGCATCAGAATGGGTCATGCCATGAATTGGCAAAGTCCTCAAACACTTGTTCAAGAAGACTACAGTGTTATCGCAGATTGTTTCCCATTTCATGA 4266 0.4158 MKRSRDDVYVSSQLKRPMVSSRGEAPGQPQMIGGGSQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGFEITLPLEDEQPPQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAVLFQDHQDLLVEFTHFLPDASAAASAHHAQSARNSLLRDRSSVMQAVGQMRPDKRERIMSHDREHSVDHLDPDDKGYMRTENELRRRGEKEKDHREDRDRKERKYDDRAYEHDNSREYNMRNFPNKPKHGGRGDDFGTEPLHQGGDGDEHFGLHSMPSPCDDKSSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITREELQTLVGDLLGKYPDLLEGFNEFLARCEKNDGFLAGVMNKKSLWNEGHASKSMKAEDRDRDRDRGRGRDDEVKERDREYRERDRSAAIANKDALGARMSILSSKDKYMYKPINELDLSNCEKCGFSYRLLPKNYPIPVASQRTELGADVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNATTKRVEELLEKINNNTIKAESSLRIEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDVKSLSTKALLAEIKEISEKKRKEDDAILAIAAGNRRPIHPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFIEPMLGVPSRPQGAEDTEDGVKAKNNSVKSGSTIAVETNGSPGSGATIINSKQLSTSRNKDESNPLEQSNSCKAWQMNGDGGVKEDNRVDTDHTSWKTETLGSSTQLCKMQASASMPDGGSGFNKQEHPNDRLVNASASLASGMEHSNGRTCTDNASGLTQSRPAVEGGLNLPSSEGGDSTRLGASANGSLTEGTKVQRYQEESVGHLKGEREEGELSPNGDFEEDNFPVYRDAGMEATSKGKDGGMVQQYQNRHGEEVCGEAGGDNGADADDEGEESHQRSLEDSENASENGDVSGSESADGECSREGHEDGEHKPESEGEAEGMADANDVDGDGSLLPFSERFLLTVRPLAKYVPAALHDKGGSSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERKWKASNETNSTDQYGRFMNALYSLLDGSSDNTKFEDDSRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDENLYRIECSSSRLSIQLMDCGHDKPELTAVSMDPNFSAYLHSDFLSVPEKKERSRIFLKRNKRKNAPSDEYSSPALEGLQVSNGLECKIACSSSKVSYVLDTEDFLFRMSKRRKTLHQNGSCHELAKSSNTCSRRLQCYRRLFPIS 1421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0908 1421 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Acco11g0908 1421 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Acco11g0908 1421 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Acco11g0908 1421 Pfam C-terminal domain of Sin3a protein 1138 1381 IPR031693 -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 1069 1091 - -
Acco11g0908 1421 FunFam Paired amphipathic helix protein SIN3 337 410 - -
Acco11g0908 1421 SUPERFAMILY PAH2 domain 339 406 IPR036600 GO:0006355
Acco11g0908 1421 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Acco11g0908 1421 MobiDBLite consensus disorder prediction 429 465 - -
Acco11g0908 1421 Coils Coil 569 593 - -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 1042 1056 - -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 968 985 - -
Acco11g0908 1421 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 911 967 - -
Acco11g0908 1421 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Acco11g0908 1421 SMART hdac_interact2seq4b 500 600 IPR013194 -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 775 841 - -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 1026 1102 - -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 223 322 - -
Acco11g0908 1421 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Acco11g0908 1421 MobiDBLite consensus disorder prediction 205 325 - -
Acco11g0908 1421 SUPERFAMILY PAH2 domain 36 106 IPR036600 GO:0006355
Acco11g0908 1421 Pfam Sin3 family co-repressor 502 594 IPR013194 -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 792 841 - -
Acco11g0908 1421 MobiDBLite consensus disorder prediction 431 465 - -
Acco11g0908 1421 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Acco11g0908 1421 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Acco11g0908 1421 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Acco11g0908 1421 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Acco11g0908 1421 MobiDBLite consensus disorder prediction 911 996 - -
Acco11g0908 1421 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Acco11g0908 1421 PANTHER SIN3B-RELATED 37 1282 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0908 Acco-ChrAcco11 19676235 19685761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0908 33 142 WRKY Transcription Factor Family AT4G12020 50.000 8.31e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Acco11g0908 Sin3a_C 1.2e-56 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g0908 11 19676235 19685761 Acco12g0748 12 7049018 7058495 CCT
Acco11g0908 11 19676235 19685761 Acco11g0908 11 19676235 19685761 ECH