Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0880 ATGGACCAACAAGTTCTTGTGGATGAAAACTTTCCACTCTTCTCCAAGTCTCGTAAATCCTCAAAAAAACACTTGCCAGCTGCCCCAACTGCTACAGCCACCACCGCTGCTGCCACCAAAGATATCAACTTTGATAGCCAACACTTTGGAAAGTCAGATGACACAGTTCTTGATTCCACCAATCCTAGTACTTTTGCGGAGCTTGGACTTGCTGAATGGGCTGTGAAGACTTGCAAAGAGCTCGCAATGCGCAAGCCTCGACAAGTCCAATTACATTGCATCCCAAAGATCCTAGATGGCCGCCATGTGCTTGGCATTGATGAGACAGGAAGTGGTAAGACTGCGGCATTTGCTCTACCAATTCTTCACAGACTGGGTGAGCATCCTTTTGGGGTTTTTGCTTTGATTTTGACGCCAACAAGGGAGTTGGCATATCAACTTGCAGAACAATTTAGGGCATTGGGTTCATGCTTGCATGTGCGGATAGCTGTGGTGGTTGGAGGGACAAATATGTTGGAGCAAGCCAAGATTTTAACATCCAGGCCGCATGTTGTGATTGCCACACCAGGAAGAATCAAGGTTTTGCTTGAGGATAATCCTGATATTCCTCCAGTGTTTTCTAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGGGTTCTTGATGTTGGCTTTCAGGATGATTTGAAGTTGATCTTTCAGTGCTTACCTGAAAGTCGGCAAAACCTATTTTTTTCTGCAACTACGACAAGTAATCTACAGAAGCTGCATGAGCGTTACCAAGACAAGCTCTATGTCTATGAGGCATATCAAGGCCTGAAAACAGTTGAGACGCTCAAGCAACAAATTATATTTGTTCCCAACAAAGTCAAGGAGGTTTATTTAATGCATATATTGTCCAAAATGGAAGATATGGGCATTCGTTCTACCATTGTTTTTTTCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTACTCGATCAAGAAGCTGCAGCTCTCTATTCATTCAAATCACAGAATCGGAGACTTGAAGCACTTCATCAATTTAAATCAGGAAAGGTTTCTATACTGCTTGCAACTGATGTTGCCAGCCGAGGTTTGGACATTCCTACAGTTGATCTAGTTATCAATTATGATGTCCCAAGGTTTCCTAGGGATTATGTCCATCGTGTTGGTCGAACTGCAAGAGCAGGTAGAGGAGGACTGGCTGTGAGCATTGTTACCCAGAATGATGTCAATCTCATTCATGAAGTAGAAGCTCTTATTGAAAGGCAACTTGAGTTGGTCGAGTACAAGGAGAATGAAGTGCTTACTCTGATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCCGAAATGAAAATGTTGGATGATGGCTTTGAGGAGAAAGCAGAAGAGCGGAAAAAACAGAAACTGCAAATGTTAGCTGAAAAAGGATTATTAAAGAAAGAGAGCAAAAAAAGGAAAAGAAATAAAGGCATCAAGGAAGGAGGAGAAGAAAACAAAGAGGAAGTGGAAACGTTACCAGACAAAAAAGGATCACTTAATAAAAAGAGTGAGAAGAGGAGGTGA 1581 0.4194 MDQQVLVDENFPLFSKSRKSSKKHLPAAPTATATTAAATKDINFDSQHFGKSDDTVLDSTNPSTFAELGLAEWAVKTCKELAMRKPRQVQLHCIPKILDGRHVLGIDETGSGKTAAFALPILHRLGEHPFGVFALILTPTRELAYQLAEQFRALGSCLHVRIAVVVGGTNMLEQAKILTSRPHVVIATPGRIKVLLEDNPDIPPVFSRTKFLVLDEADRVLDVGFQDDLKLIFQCLPESRQNLFFSATTTSNLQKLHERYQDKLYVYEAYQGLKTVETLKQQIIFVPNKVKEVYLMHILSKMEDMGIRSTIVFFSTCRDCHRLSLMLEVLDQEAAALYSFKSQNRRLEALHQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAVSIVTQNDVNLIHEVEALIERQLELVEYKENEVLTLMKKVFSAKNVAEMKMLDDGFEEKAEERKKQKLQMLAEKGLLKKESKKRKRNKGIKEGGEENKEEVETLPDKKGSLNKKSEKRR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0880 526 MobiDBLite consensus disorder prediction 494 519 - -
Acco11g0880 526 CDD SF2_C_DEAD 279 411 - -
Acco11g0880 526 SMART helicmild6 321 402 IPR001650 -
Acco11g0880 526 MobiDBLite consensus disorder prediction 470 485 - -
Acco11g0880 526 Pfam DEAD/DEAH box helicase 88 256 IPR011545 GO:0003676|GO:0005524
Acco11g0880 526 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 278 441 IPR001650 -
Acco11g0880 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 419 IPR027417 -
Acco11g0880 526 SMART ultradead3 82 282 IPR014001 -
Acco11g0880 526 MobiDBLite consensus disorder prediction 470 526 - -
Acco11g0880 526 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 213 221 IPR000629 -
Acco11g0880 526 Gene3D - 30 267 IPR027417 -
Acco11g0880 526 Gene3D - 274 521 IPR027417 -
Acco11g0880 526 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 94 267 IPR014001 -
Acco11g0880 526 Pfam Helicase conserved C-terminal domain 306 402 IPR001650 -
Acco11g0880 526 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 30 509 - -
Acco11g0880 526 CDD DEADc_DDX49 65 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0880 Acco-ChrAcco11 19114841 19119576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0880 36 419 Eukaryotic Initiation Factors Gene Family AT3G13920 32.250 2.27e-58 197