Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0875 ATGATGAACGAGGGTTCGTTTGCGAATGGGGGAGCTAATACGGCGCCGTATAACCTGTCGGATATCTGGCAATTTCCGATGAATGTCGGTGCGGGCCTTGGGGATTCCGGCGGCGGGTTGGGGCTGAGGAGGCCACAGTTCGGGCATAATTTGGGACCGCCGTTGTTCGGTGATTATACAAATCGGGATGTACCCGGTAATGGTCAAATCAACTCAGAGCAGAGAGGGAACAACGATAATAGTAATAATCATGGAGTCAACAATAATAGGAAGCGTCGTGATTCAGAGGATGAGTTTACCAAGGGCGTCTCCACCAGTAACGGCAATGGCGTGAATGATGGTGATGAAGGAAAACGGCTTAAAGCTTCAACGAATAGGAATGAGAGTAGGGACAATAAAGCTGAAGCGGAGCCCAGTTCAGGAAAGCCTGCGGAGCAAAATAACCAGCCACCTCCTCCTGAGCCTCCTAAGCAAGATTACATTCATGTTCGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTAGCAGAAAGAGCTAGAAGGGAGAAGATAAGTGAGAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATTATAAATTATATCCAATCACTACAGCGCCAAGTTGAGTTCCTGTCTATGAAACTTGAAGCTGTAAATTCAAAACTGAACCCCGGCATCGAAGTCTTTCGTCCAAAAGATTTTGGCCAACAATCATTTGAAACAGATGGCCTGGCATTTGGTTCACAAGCTACCAGAGAGTATGGCCGTGGTTCGTCACCAGAGTGGTTACACATGCAGGTAGGTGGTGGTTTTGAAAGAACATCTTAG 873 0.4674 MMNEGSFANGGANTAPYNLSDIWQFPMNVGAGLGDSGGGLGLRRPQFGHNLGPPLFGDYTNRDVPGNGQINSEQRGNNDNSNNHGVNNNRKRRDSEDEFTKGVSTSNGNGVNDGDEGKRLKASTNRNESRDNKAEAEPSSGKPAEQNNQPPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSKLNPGIEVFRPKDFGQQSFETDGLAFGSQATREYGRGSSPEWLHMQVGGGFERTS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0875 290 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 69 258 IPR024097 GO:0006355
Acco11g0875 290 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 237 IPR036638 GO:0046983
Acco11g0875 290 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 219 IPR011598 GO:0046983
Acco11g0875 290 Pfam Helix-loop-helix DNA-binding domain 173 220 IPR011598 GO:0046983
Acco11g0875 290 SMART finulus 175 225 IPR011598 GO:0046983
Acco11g0875 290 MobiDBLite consensus disorder prediction 51 159 - -
Acco11g0875 290 MobiDBLite consensus disorder prediction 86 100 - -
Acco11g0875 290 MobiDBLite consensus disorder prediction 114 138 - -
Acco11g0875 290 Gene3D - 166 240 IPR036638 GO:0046983
Acco11g0875 290 Coils Coil 216 236 - -
Acco11g0875 290 MobiDBLite consensus disorder prediction 64 85 - -
Acco11g0875 290 FunFam Basic helix-loop-helix transcription factor 166 238 - -
Acco11g0875 290 CDD bHLH_AtBPE_like 159 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0875 Acco-ChrAcco11 19002139 19004789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0875 1 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.452 2.36e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco11g0875 HLH 2.4e-08 No_clan