Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0840 ATGGCGGCAGGTGGAAAACTCTTTGGGACATCCAATATGACGACACTCTTGCTCCAAAACGAAAGACTTCCTCCCTCTTCTGATGTTCTTGACTCTACCTGGGCTCACACCTCAAATCCCACTTTCCCAGGACCAAAATCCATGGTGAATTTTGAGAGACTGAGTGGCTGCAGAGTAGCAGACCGGCCATTTCTACATGGAATGGAGAAAGAAGAGACAGAGGAGGAAGCTTACGAGGTATGCTTTCATCAAGCTGGGAAAAAGAGGAGGCTCACGAGCGAGCAAGTTCAGTTTCTGGAGAAGAACTTCGAGGTGGAGAACAAGCTTGAACCAGAGAGGAAGGTTCAGCTAGCGAAGGAACTGGGGTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAGAACAGAAGGGCAAGATTCAAGACCAAACTGCTTGAGCAAGACTATGGCAAGTTGAAAGCTAGCTATGATAAACTCAGGAGTGATCATGACAATCTTGCCAAGGAGAACGACAAGTTAAAAGAAGAGGTGAAAGCCCTAAAAAACAGATTGGATGCGAGAGAAAAAGAGAGAGAAGATTCTCACAAATCGGAGACCAATGCAGATCATGAAGATTCAGAAGCAGTGAATTCGGAAGAAGGAGAGCCACAGAAAGATGGAACCAAAGACGAAGGAGCAGCGCCTAAGGGGATAAAGGTGTGGAGGCAGCAGGAAGACGCGAATTCATCGGCGAAAAGTGATGTGTTGGATTCGGAGTACACGGAGGCGAATCACCATTCGTGGATGCAGCATGATCCGGTGGATTTGTCGCCGGCGGCGGAAGCTGAAGCTGAAGTCGCGGAACACTCGGATTTCTCACAGGACGAAGAAGACGAAAACCTCATGAGGAGCAATCTGCTGAATCTGGCGTGCTTCCCGAAGGTGGAAGAAGATGGATGCTACAACGATCCTCCGGAAGAAGGTTGTAACAATTTTGGATTCCCTGTTGAAGACCATGCCTTCTGTTTTTGGCCTTGCTGA 1017 0.4838 MAAGGKLFGTSNMTTLLLQNERLPPSSDVLDSTWAHTSNPTFPGPKSMVNFERLSGCRVADRPFLHGMEKEETEEEAYEVCFHQAGKKRRLTSEQVQFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKLLEQDYGKLKASYDKLRSDHDNLAKENDKLKEEVKALKNRLDAREKEREDSHKSETNADHEDSEAVNSEEGEPQKDGTKDEGAAPKGIKVWRQQEDANSSAKSDVLDSEYTEANHHSWMQHDPVDLSPAAEAEAEVAEHSDFSQDEEDENLMRSNLLNLACFPKVEEDGCYNDPPEEGCNNFGFPVEDHAFCFWPC 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0840 338 SUPERFAMILY Homeodomain-like 78 141 IPR009057 -
Acco11g0840 338 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Acco11g0840 338 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Acco11g0840 338 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Acco11g0840 338 CDD homeodomain 87 142 IPR001356 GO:0003677
Acco11g0840 338 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Acco11g0840 338 Gene3D - 82 146 - -
Acco11g0840 338 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 73 219 IPR045224 GO:0003700
Acco11g0840 338 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Acco11g0840 338 SMART HOX_1 85 146 IPR001356 GO:0003677
Acco11g0840 338 FunFam homeobox-leucine zipper protein ATHB-6-like 90 136 - -
Acco11g0840 338 Coils Coil 148 189 - -
Acco11g0840 338 MobiDBLite consensus disorder prediction 235 249 - -
Acco11g0840 338 MobiDBLite consensus disorder prediction 181 228 - -
Acco11g0840 338 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Acco11g0840 338 MobiDBLite consensus disorder prediction 181 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0840 Acco-ChrAcco11 17905098 17906826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0840 44 187 Homeobox Transcription Factor Family AT3G01470 52.778 1.29e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco11g0840 Homeodomain 2.2e-16 CL0123