Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0821 ATGGAGCTTCCAACTGTAAAAACTGAATTCTATCCAAGAAACCATAGGATGTTCATGATGGAAGGTGGGAATATTGACATAAAGTGCATGAAAAGGCCGCGAAGAGACTCATCGGTGACAGTTTTTGAGAGCAATGAGAAACAAGAGCAACCACAGCAGGGTGGTCAATCAACTACTACAACTACTGTCAAGAGAAGCTCAAGGTTTCGCGGAGTTAGCAGACATAGATGGACAGGGAGATATGAAGCTCATTTATGGGACAAAGGGACTTGGAATCCAACTCAAAAGAAGAAAGGGAAGCAAGGAGCTTATGCTGATGAAGAAGCTGCTGCTAGAGCATATGATTTGGCTGCACTCAAGTACTGGGGAACTTCTACCTTCACAAACTTCCCTGTATCTAATTATGAGAACGAGATTGAGATGATGAAAACTATGACAAAAGAAGAATATCTTGCTTCTTTAAGAAGAAGAAGCAGTGGCTTTTCCAGAGGAGTATCAAAGTACAGAGGAGTAGCAAGGCACCATCACAATGGAAGGTGGGAAGCAAGAATAGGGAGAGTGTTTGGTAACAAGTATCTCTACCTTGGCACATACAGTACGCAAGAAGAGGCTGCTCGTGCATATGATATAGCAGCTATAGAATACAGAGGCTTGAACGCAGTAACAAACTTTGATTTGAGCACATATATTCGATGGCTAAGACCTGAAGCCCTTAATACTACTCCTCAAGAACAACAACATAACCCAGAATTTCACAATCTCATGACAAATCCTAGCCTCACCCAAACCAGAGAAATGGCTGAGGTACCAAATTTCAATCGCAATCCGAAGGAGCAAGACATACCTCAGTATTCAACCCCTTTATGTTATAGTAATAGTGCCAAGTCATCGTCTTCTCCAACAGCATTAGGGCTTCTGCTGAAATCTTCAGCGTTTAGAGAGCTAATGCAGAAAAATATGAATCAGGGAAAAGGTGAAGAAGAACAAGAAGAAGAGAGTAATGGGTTTGCTTACTTGTACTCTTCCCATGGCAACAGAATACCAAATTTACTGTTACCGGAAGAGAAAGCATTGCCGCCACAGTATTATAGAACTGGGCAATCTGCATGGGACGGATGCTTTCAACGAATGTGA 1134 0.4206 MELPTVKTEFYPRNHRMFMMEGGNIDIKCMKRPRRDSSVTVFESNEKQEQPQQGGQSTTTTTVKRSSRFRGVSRHRWTGRYEAHLWDKGTWNPTQKKKGKQGAYADEEAAARAYDLAALKYWGTSTFTNFPVSNYENEIEMMKTMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGLNAVTNFDLSTYIRWLRPEALNTTPQEQQHNPEFHNLMTNPSLTQTREMAEVPNFNRNPKEQDIPQYSTPLCYSNSAKSSSSPTALGLLLKSSAFRELMQKNMNQGKGEEEQEEESNGFAYLYSSHGNRIPNLLLPEEKALPPQYYRTGQSAWDGCFQRM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0821 377 Gene3D AP2/ERF domain 166 227 IPR036955 GO:0003700|GO:0006355
Acco11g0821 377 Gene3D AP2/ERF domain 67 133 IPR036955 GO:0003700|GO:0006355
Acco11g0821 377 ProSiteProfiles AP2/ERF domain profile. 68 131 IPR001471 GO:0003700|GO:0006355
Acco11g0821 377 MobiDBLite consensus disorder prediction 36 69 - -
Acco11g0821 377 MobiDBLite consensus disorder prediction 43 67 - -
Acco11g0821 377 FunFam AP2-like ethylene-responsive transcription factor 166 227 - -
Acco11g0821 377 ProSiteProfiles AP2/ERF domain profile. 167 225 IPR001471 GO:0003700|GO:0006355
Acco11g0821 377 SUPERFAMILY DNA-binding domain 67 133 IPR016177 GO:0003677
Acco11g0821 377 CDD AP2 166 227 IPR001471 GO:0003700|GO:0006355
Acco11g0821 377 PRINTS Ethylene responsive element binding protein signature 207 227 IPR001471 GO:0003700|GO:0006355
Acco11g0821 377 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Acco11g0821 377 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 49 296 - -
Acco11g0821 377 SMART rav1_2 167 231 IPR001471 GO:0003700|GO:0006355
Acco11g0821 377 SMART rav1_2 68 137 IPR001471 GO:0003700|GO:0006355
Acco11g0821 377 SUPERFAMILY DNA-binding domain 166 227 IPR016177 GO:0003677
Acco11g0821 377 Pfam AP2 domain 166 217 IPR001471 GO:0003700|GO:0006355
Acco11g0821 377 Pfam AP2 domain 67 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0821 Acco-ChrAcco11 17314141 17316553 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0821 64 229 AP2-EREBP Transcription Factor Family AT5G57390 70.414 6.35e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Acco11g0821 AP2 1.1e-07 CL0081