Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0820 ATGTTCATGATGGAAGGCGCGAATATTGACATAAAGTGCATGAAATGGCGGCAAAGAGACTCATGGGTAGCAGTTTTAGAGGGCAACGAGAAACAAGAGCAACCACAGCAGGGTGGTCAATCATCTACTACAACTACTGTCAAGAGAAGCTCAAGGTTTTGTGGAGTTAGTAGACATAGATGGACAGGGAGAATGAAGCTCATTTATGGGACAAAGGGAGTTGGAATCCAACTCAAAAGAAGAAAGGGAAGCAAGGTTGCGTGTTTAACACTTGATCTGCTTCATTTCTTATTGGCTGTTGTTCTTTATTATGCTGACCTTGATTTCTCACACCTTGTTCATTTCTGTTGCTTTTGTCTGGCAAATTTGGATTCATTGTGCTGGTATGGATCAGTATATTTGGGAGCTTATGCTGATGAAGAAGCTGCTGCTAGAGCATATGATTTGGCTGCACTCAAGTACTGGGGAACTTCCATCTTCACAAACTTCCCTGTATCTAATTATGAGAATGAGATTGAGATAATGAAAACTATGACAAAAGAAGAATATCTTGCTTCTTTAAGAAGAAGAAGCAGTGGCTTTTCCAGAGGAGTATCAAAGTACAGAGGAGTAGCAAGGCACCATCACAATGGAAGGTGGCAAGCAAGAACAGGGAGAGTGTTTGGTAACAAGTACCTCTACCTTGGCACTTACAGTACGCAAGAAGAGGCTGCTCGTGCATACGATATAGCAGCTATAGAATACAGAGGCTTGAACGCAGTAACAAACTTTGGTTTGAGCACATACATTAGATGGCTAAGACCTGAAGCCCTTAATACTACTCCTCAAGAACAACAACAGAACCCAGAATTTCACAATCTCATGACGAACCCTAGCCTCACCCAACCAGAGAAATCGCTGAGTAATAGAGCCAAGTCATCGTCTTCTCCGACAGCATTAGGGCTTCTGCTGAAATCGTCAGTGTTCAGAGAGCTAATACAGAAAAATATGAATCAAGGAAAAGCAAATTTACAGTTACCGGAAGAGAAAGCATTGCCGCCACAGTATCATAGAACTGGGCAATCTGCATGGGATGGGTGCTTTCAACGGATGTGA 1095 0.4247 MFMMEGANIDIKCMKWRQRDSWVAVLEGNEKQEQPQQGGQSSTTTTVKRSSRFCGVSRHRWTGRMKLIYGTKGVGIQLKRRKGSKVACLTLDLLHFLLAVVLYYADLDFSHLVHFCCFCLANLDSLCWYGSVYLGAYADEEAAARAYDLAALKYWGTSIFTNFPVSNYENEIEIMKTMTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWQARTGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGLNAVTNFGLSTYIRWLRPEALNTTPQEQQQNPEFHNLMTNPSLTQPEKSLSNRAKSSSSPTALGLLLKSSVFRELIQKNMNQGKANLQLPEEKALPPQYHRTGQSAWDGCFQRM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0820 364 CDD AP2 199 257 IPR001471 GO:0003700|GO:0006355
Acco11g0820 364 SUPERFAMILY DNA-binding domain 199 259 IPR016177 GO:0003677
Acco11g0820 364 Gene3D AP2/ERF domain 51 166 IPR036955 GO:0003700|GO:0006355
Acco11g0820 364 MobiDBLite consensus disorder prediction 284 309 - -
Acco11g0820 364 Gene3D AP2/ERF domain 199 259 IPR036955 GO:0003700|GO:0006355
Acco11g0820 364 SUPERFAMILY DNA-binding domain 131 166 IPR016177 GO:0003677
Acco11g0820 364 ProSiteProfiles AP2/ERF domain profile. 70 164 IPR001471 GO:0003700|GO:0006355
Acco11g0820 364 SMART rav1_2 200 264 IPR001471 GO:0003700|GO:0006355
Acco11g0820 364 SMART rav1_2 52 170 IPR001471 GO:0003700|GO:0006355
Acco11g0820 364 MobiDBLite consensus disorder prediction 30 51 - -
Acco11g0820 364 ProSiteProfiles AP2/ERF domain profile. 200 258 IPR001471 GO:0003700|GO:0006355
Acco11g0820 364 Pfam AP2 domain 199 250 IPR001471 GO:0003700|GO:0006355
Acco11g0820 364 FunFam AP2-like ethylene-responsive transcription factor 199 260 - -
Acco11g0820 364 MobiDBLite consensus disorder prediction 29 51 - -
Acco11g0820 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 36 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0820 Acco-ChrAcco11 17282751 17285143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0820 48 262 AP2-EREBP Transcription Factor Family AT5G57390 51.628 2.92e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco11g0820 AP2 3.4e-11 CL0081