Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0789 ATGGCCAAGAGACACCGTTTCTTCTCTCGTTTCTTTACACTTCTGTTCATCATTTTCCCGCCATGTGTGTCCGTAAGGATAGAAACAGAGTCTCTCCTTCAGTTTAAGAAGCATTTGAAGGACCCTTTGGATTCTTTAGCCTCCTGGACAGATTCAGAGTCTCCCTGTGAATTTGACGGAGTTACTTGTGATAGTTTTTCTGGGAAAATCATTGAAATTTCGCTGGAAAATAGGTCCCTTTCTGGAGAGATTTTCCCATCAATTTTTGCTCTACAGAACCTTCGAGTTCTGTCACTTGCATCAAATTTTATTTCTGGGAAGCTTCCATATGAAATAAGCAATTGCAGCAACCTTAGAGTTTTGAACCTAACAGAAAATGATATGGTTGGAGTTTTGCCAGACTTGTCTGGGATGAGAAATCTCAAAGTTCTTGACCTCTCTGCAAATTACTTTTCCGGCAGATTTCCGAGCTGGGCCGGAAATCTAACCGGTCTAGTTTCTCTTGGGCTCGGGGAAAATGAGTATGTTGAGAGTGAAATTCCTGAGACTCTTGGCAATCTGAATAACGTGACTTGGCTCTATCTTGGTGGTTCACATTTGAGAGGAGAGATTCCAGAATCAATTTATGAAATGAGGGCTATGGAGACACTGGATATTTCCAGAAACATGATCTCTGGGAAACTCTCCAAGTCAATTTGGAAGTTGAAAAATCTTTATAAGATTGAGCTTTTCTCAAACAATTTAACTGGGCAAATCCCAGCTGAGCTAGCAAACTTGACCAAGCTTGAGGAGATTGACATTTCTATGAACCATCTGTATGGTAAATTGCCAGAGGTGATTGGTACTATGAAGAATTTGGTTGTTTTTCAACTCTATGAAAACAACTTTTCTGGAGAACTTCCTTCTGGTTTTGGAGATATGCAAAATCTTGTTGGATTCTCAATTTATCGAAACAGCTTCTCGGGGAAAATTCCAGAAAATTTTGGCCGATTCTTGCCGCTGGAGAGCATTGATATTTCAGAAAATCAATTTTCAGGTGATTTTCCAAAGTTCTTGTGTGAAAACAGAAAGTTGAAATTTTTGCTTGCCTTACAAAATAGTTTCTCGGGTGAATTGCCTGAGACTTATGTTACATGTAAATCACTGGAGAGATTCAGGGTCAGCAGGAATAGCTTGTCTGGAAAAATCCCAAATGAACTGTGGGCACTTCCATTTGTAAAGATAATTGATTTGGCTGACAATAATTTTGTTGGTGATTTATCCCCAAAAATTGGGCTTTCTTCTAGCTTAAGCCAGTTAGTTCTAACAAAGAACAAGTTTTCAGGTAAGCTTCCTCCGCAACTTGGTAAGCTGATGAATTTAGAGAAGCTATATTTGAGCAATAACAATTTCTATGGTGAAATACCAGCTGAAATTGGAGCTTTGAAGCAATTATCCTCTTTTCATCTAGAAGAGAATTCATTAACTGGATCGATACCTGCAGAACTTGGCAATTGCGCAAGACTAGTGGACTTGAATCTTGCTCGGAATTTTCTAACAGGCACTATCCCTCAGTCATTTTCACTAATGAGCTCATTGAACTCTCTCAACCTATCTGGCAACAAACTTACAGGCTCAATCCCAGAAAGCTTAGTATCAATGAAATTGAGCTCAATTGATTTTTCTGAAAACCAGTTGTCTGGGAGGATCCCGAACAATCTTCTAATTATTGGTGGTGGTGAAGCTTTTGTTGGAAACCCAGGACTTTGTGTTGAGCAAAATTCAAGAACTCTCATGAATTCTGAATTCAACATTTGTACGAACATGTATGGTCAGAAAAGGGCAGTCGCTGATAAGATAGTAATTCTCTGTGTCATTGCTTCTGTCTTGGTTGTAGTGTTAGCTGTGTTGCTTTTGAGTTATGGAAACTTCAAGTATGAAAAAGCAGACCTGGACAGAAACTTGCAAGATCAAAAGGAAACAGATTCAAAGTGGAAAATTGCTTCTTTCCACCAGGTTGATCTTGATGTGAATGAAATATGCAATTTGGATGAAGATAATTTGATTGGAACTGGTGGTACTGGAAAGGTATATCGAATTGACTTGAAGAAAAATGGTTCCACGGTGGCCATAAAACAACTATGGAAAGGAGATGGTGTGAAAATTTTGGCCGCAGAAATGGAAACTTTGGGGAAAATCAGGCATAGAAATATACTTAAGCTTTATGCTTGTTTGTTTAAGGGAGGATCAAACTATTTAGTGTTAGAGTACATGCCAAATGGTAATCTTTTTCACGCTCTTCACAGACAGATAAAGGGTGGGAAGCCAGAATTGGATTGGTACCAGAGATATAAAATTGCACTGGGCACTGCAAAAGGAATTGCCTATTTACATCATGATTGCTCTCCGCCTATCATTCACAGAGACATAAAATCCAGTAACATTTTGCTTGATGAGGATTATGAGGCAAAAATTGCTGATTTTGGGGTTGCAAAATTTGCAGAAAAAACTGATCAACAGTTGGGTTTTAGCTGTCTTGCTGGTACTTATGGTTATATTGCTCCTGAGCTTGCTTATACACGCGAAGTCAGCGAAAAGAGTGATGTGTATAGCTTTGGAGTGGTGTTGCTAGAATTACTCACAGGAAGGGAACCCATTGAAGAGGATTACGGCGAAGGGAAGGATATTGTATATTGGGTTATTACTAATCTTGATAACCGTGAAAGCGCTATAAAGATCCTTGATGATAAAATAGTATCTGAGTCAGCTGAAGATGAAATGATCAAGGTCTTGAAGGTTGCTATCCACTGCACAACTAAGCTCCCTTCTTTGCGGCCTACGATGAGAGATGTTGTGAAGATGCTTATTGATGCTTATTCTAACCCTTTTCAATCTCCAGGCAGCGATTTTGAGAAAGATGTTGAGGGTTTTATGTAG 2916 0.3909 MAKRHRFFSRFFTLLFIIFPPCVSVRIETESLLQFKKHLKDPLDSLASWTDSESPCEFDGVTCDSFSGKIIEISLENRSLSGEIFPSIFALQNLRVLSLASNFISGKLPYEISNCSNLRVLNLTENDMVGVLPDLSGMRNLKVLDLSANYFSGRFPSWAGNLTGLVSLGLGENEYVESEIPETLGNLNNVTWLYLGGSHLRGEIPESIYEMRAMETLDISRNMISGKLSKSIWKLKNLYKIELFSNNLTGQIPAELANLTKLEEIDISMNHLYGKLPEVIGTMKNLVVFQLYENNFSGELPSGFGDMQNLVGFSIYRNSFSGKIPENFGRFLPLESIDISENQFSGDFPKFLCENRKLKFLLALQNSFSGELPETYVTCKSLERFRVSRNSLSGKIPNELWALPFVKIIDLADNNFVGDLSPKIGLSSSLSQLVLTKNKFSGKLPPQLGKLMNLEKLYLSNNNFYGEIPAEIGALKQLSSFHLEENSLTGSIPAELGNCARLVDLNLARNFLTGTIPQSFSLMSSLNSLNLSGNKLTGSIPESLVSMKLSSIDFSENQLSGRIPNNLLIIGGGEAFVGNPGLCVEQNSRTLMNSEFNICTNMYGQKRAVADKIVILCVIASVLVVVLAVLLLSYGNFKYEKADLDRNLQDQKETDSKWKIASFHQVDLDVNEICNLDEDNLIGTGGTGKVYRIDLKKNGSTVAIKQLWKGDGVKILAAEMETLGKIRHRNILKLYACLFKGGSNYLVLEYMPNGNLFHALHRQIKGGKPELDWYQRYKIALGTAKGIAYLHHDCSPPIIHRDIKSSNILLDEDYEAKIADFGVAKFAEKTDQQLGFSCLAGTYGYIAPELAYTREVSEKSDVYSFGVVLLELLTGREPIEEDYGEGKDIVYWVITNLDNRESAIKILDDKIVSESAEDEMIKVLKVAIHCTTKLPSLRPTMRDVVKMLIDAYSNPFQSPGSDFEKDVEGFM 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0789 971 FunFam Probable inactive receptor kinase RLK902 25 184 - -
Acco11g0789 971 FunFam Leucine-rich repeat receptor protein kinase EMS1 204 288 - -
Acco11g0789 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Acco11g0789 971 SMART serkin_6 676 953 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g0789 971 Pfam Leucine rich repeat 501 559 IPR001611 GO:0005515
Acco11g0789 971 Pfam Leucine rich repeat 139 200 IPR001611 GO:0005515
Acco11g0789 971 Gene3D Phosphorylase Kinase; domain 1 659 750 - -
Acco11g0789 971 ProSiteProfiles Protein kinase domain profile. 676 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g0789 971 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Acco11g0789 971 ProSitePatterns Protein kinases ATP-binding region signature. 682 705 IPR017441 GO:0005524
Acco11g0789 971 SUPERFAMILY Protein kinase-like (PK-like) 672 948 IPR011009 -
Acco11g0789 971 Pfam Protein kinase domain 678 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g0789 971 FunFam Receptor-like protein kinase HSL1 289 592 - -
Acco11g0789 971 SUPERFAMILY L domain-like 27 325 - -
Acco11g0789 971 FunFam leucine-rich repeat receptor-like protein kinase TDR 751 958 - -
Acco11g0789 971 CDD STKc_IRAK 682 948 - -
Acco11g0789 971 Gene3D Ribonuclease Inhibitor 24 175 IPR032675 -
Acco11g0789 971 FunFam Leucine-rich receptor-like protein kinase family protein 666 750 - -
Acco11g0789 971 Gene3D Ribonuclease Inhibitor 176 235 IPR032675 -
Acco11g0789 971 Gene3D Ribonuclease Inhibitor 236 308 IPR032675 -
Acco11g0789 971 Gene3D Transferase(Phosphotransferase) domain 1 751 959 - -
Acco11g0789 971 SUPERFAMILY RNI-like 276 564 - -
Acco11g0789 971 Gene3D Ribonuclease Inhibitor 309 593 IPR032675 -
Acco11g0789 971 SMART LRR_typ_2 259 283 IPR003591 -
Acco11g0789 971 SMART LRR_typ_2 451 475 IPR003591 -
Acco11g0789 971 SMART LRR_typ_2 523 547 IPR003591 -
Acco11g0789 971 SMART LRR_typ_2 91 115 IPR003591 -
Acco11g0789 971 SMART LRR_typ_2 138 162 IPR003591 -
Acco11g0789 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 213 949 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0789 Acco-ChrAcco11 16484870 16488409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0789 13 951 Receptor kinase-like Gene Family AT1G72180 57.278 0.0 1068
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Acco11g0789 Pkinase 1.7e-48 CL0016