Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0730 ATGGGCAGGGTAAAGCTCAAGATTAAGAGACTGGAGAATACCAATAGTCGCCAGGCGACTTTTGCTAAAAGAAAGAATGGAATCATAAAGAAGGCTACTGAGTTATCGATATTGTGCGATATAGATATAATTCTGCTAATGTTCTCACCATCTGGCAAACCCTCATTGTGCAGAGGACTACGCAGTGACATGGAAGAGGTTATTGAGAAGTTTGTGCAGTTAACTCCACAGGAGAGGGCAAAACGGAAGTTGGAGAGTCTGGAAGCACTGAAAAAAACATTTCGGAAGTTAGACCATGATGTCAATATACAAGAATTTCTGGGTACAAACAGTCAAACTAAAGAGGACCTAAGGAATCAATCCAGGTTATTGCAAACTAAGATTTCTGAAATACATAATAGATTGAGCTGTTGGACCGAGCCTGACGAAATAAACAATGTGGAACAATTAGTACAAATGGAACATTCAATTAGGGAGTCACTCAATAACATTCAAATATGCAAGGAAAATATGCAAAAGCAGCAACTTGCGAGATTGGAATGCACTAACCAGTTCAATGAGATGCAGATCCCCTACAGAATGAGTACTGATCAACATCTTCAATCACTTTCATGGGTTCCTAATAATGAAGGTCAACATATAGTTTTACCTGAGGACTCAGACTTGCTTCTTCACAAAGAACTTGAGTGCTCTGCAAGCTCTTTTGGGAGTTATGCTAGTTATCTTGGCTCAAGTACAAAAACAGAAATGTCTAGTTCTGGACAAGAAAATGGTGTCATCAGTGATTTGACCAATAATGCTCCTATGAGACTACAATTCGGGCAGTTTCAATATGGACTACCACCATACAATTACAATTTACTGAATGACATAAGGATCCAACCAGCTGTAGAGATGAACCCTCATGAAAATCCCTTAGATTATCCCGTTAATGGAAGCTTTGAAGCCCCTCAACCAGGTGCCCCAACTTTGTTTGGTGAGCGTTTGTATGGCCAGGCAAGTTCCCCTCAACTTCACTTTGGCTTCTCATAG 1032 0.4021 MGRVKLKIKRLENTNSRQATFAKRKNGIIKKATELSILCDIDIILLMFSPSGKPSLCRGLRSDMEEVIEKFVQLTPQERAKRKLESLEALKKTFRKLDHDVNIQEFLGTNSQTKEDLRNQSRLLQTKISEIHNRLSCWTEPDEINNVEQLVQMEHSIRESLNNIQICKENMQKQQLARLECTNQFNEMQIPYRMSTDQHLQSLSWVPNNEGQHIVLPEDSDLLLHKELECSASSFGSYASYLGSSTKTEMSSSGQENGVISDLTNNAPMRLQFGQFQYGLPPYNYNLLNDIRIQPAVEMNPHENPLDYPVNGSFEAPQPGAPTLFGERLYGQASSPQLHFGFS 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0730 343 Coils Coil 77 97 - -
Acco11g0730 343 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Acco11g0730 343 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Acco11g0730 343 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco11g0730 343 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco11g0730 343 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco11g0730 343 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 204 - -
Acco11g0730 343 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Acco11g0730 343 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco11g0730 343 Coils Coil 114 134 - -
Acco11g0730 343 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Acco11g0730 343 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0730 Acco-ChrAcco11 14403484 14407234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0730 1 321 Type I MADS-box Gene Family AT2G03060 50.862 5.18e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco11g0730 SRF-TF 2e-19 No_clan