Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0729 ATGACGAAGCTTGCATGTCGCAACTCCACGCATTCTTCTTCACACCACTTCCTCTCAACTTCCCTCTTCTTCTTGAACCCCCCCCTCAAAAAAAAAACCTTCCTCCTTTCTTCTCTGACTTGTTGCTCTGCCTCTGTCAAAGTAACCATCTTTTCACTTCAGAATATCGAAATGGCTCACATGGGGTTGCTTGTCGCCGCAATGGCTTTTCTCACGGTGGTTTCCCCCGCCCATGGCTACGGCGGAGGGTGGACCAACGCCCACGCCACCTTCTATGGGGGAAGTGACGCGTCAGGGACAATGGGTGGTGCTTGTGGGTATGGGAATTTGTACAGCCAGGGTTATGGAACAAACACAGCTGCTCTGAGCACAGCCCTGTTCAACAATGGCCTGAGCTGTGGTTCTTGCTTTGAGATTAAGTGTGCCAATGATGCTAAATGGTGCCTCCCTGGCTCCATTGTGGTCACAGCCACCAATTTCTGTCCTCCAAACAATGCCTTGCCCAACAATGCCGGTGGCTGGTGCAACCCTCCCCTCCAACACTTCGACCTCGCCCAGCCCGTTTTTCTCCGCATTGCCCAGTACCGAGCCGGAATTGTCCCGGTGGCCTACCGCAGGGTGTCCTGTAGGAGAAAGGGAGGTATTAGGTTCACAGTCAATGGGCACTCGTACTTCAACCTGGTCCTCATCACCAACGTGGGCGGCGCTGGAGATGTTAATGCAGTGGCTGTGAAAGGGTCAAGAACCGGCTGGATGCCCATGTCAAGGAACTGGGGACAGAATTGGCAGAGCAACAACTACCTTAACGGACAAAGCCTGTCGTTTAAGGTCACAACCAGTGATGGTCGCACTGTGGTGTCTAATAACGTTGCTCCGGCAGGCTGGTCCTTTGGCCAAACCTTCACTGGGGCTCAGTTTCACTAA 924 0.5325 MTKLACRNSTHSSSHHFLSTSLFFLNPPLKKKTFLLSSLTCCSASVKVTIFSLQNIEMAHMGLLVAAMAFLTVVSPAHGYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIKCANDAKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLQHFDLAQPVFLRIAQYRAGIVPVAYRRVSCRRKGGIRFTVNGHSYFNLVLITNVGGAGDVNAVAVKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTFTGAQFH 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0729 307 PRINTS Expansin signature 114 128 IPR002963 GO:0009664
Acco11g0729 307 PRINTS Expansin signature 172 189 IPR002963 GO:0009664
Acco11g0729 307 PRINTS Expansin signature 213 225 IPR002963 GO:0009664
Acco11g0729 307 PRINTS Expansin signature 153 163 IPR002963 GO:0009664
Acco11g0729 307 PRINTS Expansin signature 189 202 IPR002963 GO:0009664
Acco11g0729 307 PRINTS Expansin signature 260 281 IPR002963 GO:0009664
Acco11g0729 307 PRINTS Expansin signature 141 152 IPR002963 GO:0009664
Acco11g0729 307 PRINTS Expansin signature 225 246 IPR002963 GO:0009664
Acco11g0729 307 PRINTS Expansin signature 289 305 IPR002963 GO:0009664
Acco11g0729 307 Gene3D - 68 210 IPR036908 -
Acco11g0729 307 PANTHER EXPANSIN-A15 65 306 IPR002963 GO:0009664
Acco11g0729 307 SUPERFAMILY Barwin-like endoglucanases 83 232 IPR036908 -
Acco11g0729 307 FunFam Expansin 74 210 - -
Acco11g0729 307 SMART dpbb_1 119 204 IPR007112 -
Acco11g0729 307 Pfam Lytic transglycolase 119 204 IPR009009 -
Acco11g0729 307 CDD DPBB_EXPA_N 83 209 - -
Acco11g0729 307 Pfam Expansin C-terminal domain 215 292 IPR007117 -
Acco11g0729 307 FunFam Expansin 214 306 - -
Acco11g0729 307 PRINTS Expansin/Lol pI family signature 123 141 IPR007118 GO:0005576
Acco11g0729 307 PRINTS Expansin/Lol pI family signature 251 265 IPR007118 GO:0005576
Acco11g0729 307 PRINTS Expansin/Lol pI family signature 289 303 IPR007118 GO:0005576
Acco11g0729 307 PRINTS Expansin/Lol pI family signature 197 213 IPR007118 GO:0005576
Acco11g0729 307 PRINTS Expansin/Lol pI family signature 101 119 IPR007118 GO:0005576
Acco11g0729 307 PRINTS Expansin/Lol pI family signature 83 98 IPR007118 GO:0005576
Acco11g0729 307 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 224 303 IPR007117 -
Acco11g0729 307 SUPERFAMILY PHL pollen allergen 211 303 IPR036749 -
Acco11g0729 307 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 102 214 IPR007112 -
Acco11g0729 307 Gene3D - 213 307 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0729 Acco-ChrAcco11 14388356 14390618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0729 58 307 Expansin Gene Family AT2G03090 81.673 8.76e-155 431