Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0708 ATGGCTTCTTCCATTTTCTCTGTCCTTCGAGGTTCTGCTTTTCTTTCTTCTCCTATATCCCACAAAATCAACCCCTTCACCTTTTCGATGCCACCAAAAACCCCACTAGTTCACATCAGAAAACCTCTCTCCGCCAAATCCCTTTCTTCTGTCGAAATTGATACAGCATTGGCGCCGGCGATTCGGACATTCTGGCAGTGGCTATGGGAAGAAGGGGTCATCTCTTCGAAGACGCCGGTGGAGCCCGGGGTTGTGCCGGAAGGACTCGGACTTATTGCCAGGAGAGACATTTCACGAAACGAAGTCGTTTTGCAGGTGCCCAAGAGATTATGGATTAACCCCGATGCGGTCACAGCTTCGGAGATTGGGAACGTGTGTAGCGGATTGAAGCCTTGGGTGTCTGTTGCTCTGTTCTTGATTAGAGAGAGATCGAGGGATGAGTCTGTTTGGAAGCAATACTTCAAAATTCTCCCAGAGTTCACTGATTCGACAATATATTGGTCAGAGGAGGAGCTCTCTGAGCTTCAAGGTACTCAACTCCTGGATACAACACTAGCTGTGAAAGAATATGTGCAGAATGAGTTTCTGAAACTGGAAGAAGAAATCATACTTCCTAATAAGAAGCTTTTCCCTTCTCCTATCACTCTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCTTTCTCTCGCCTTCGCAATGAAAATCTAGTGGTTATTCCACTTGCAGACTTGATAAACCATAGTTTCAGAGTAACAACAGAAGATCATGCCTATGAAATTAAAGGGGCAGCAGGTCTTTTCTCTTGGGATTACTTGTTTTCTCTAAGGAGCCCTCTTTCTGTCAAGGCTGGGGAGCAGATATTTATTCAATATGATTTGAAGAAAAGCAATGCAGAGTTGGCTCTGGACTATGGCTTCATTGAACCAAATTCAAACAGGAATGCATATACACTGACGCTACAAATATCTGAATCAGACCCTTTCTATGATGACAAACTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACTGCATATTTTGACATCTTCTTTGACCGGCAACTTCCACCAGGACTGCTTTCATATCTGCGTCTGGTGGCACTTGGTGGCACTGATGCTTTCTTGTTGGAATCTATATTCAGAAATTCTGTGTGGGGTCATCTTGAGTCGCCCGTAAGCCATGACAATGAGGAGCTAATATGTCGAGTTGTTCAAGATGCCTGCAAATCTGCCCTTTCTGGTTACCACACCACCATTGAAGAGGATGAGAAGTTAAAAGAAGAAAAGCTAGACTCAAGGCTGGCAATTGCAGTAGGAATAAGAGAAGGAGAAAAGAAGGTGCTGCAGCAGATTGAAGGTATTTTCAAGGAGAAAGAGTTGGAGCTGGATCTGTTAGAATACTATCAAGAAAGGCGGCTCAAGGATCTTGGTCTTTCTGGAGAAAATGGTGACATCCTCGGGGATCTCAGCAAGTTCATGTAA 1491 0.4447 MASSIFSVLRGSAFLSSPISHKINPFTFSMPPKTPLVHIRKPLSAKSLSSVEIDTALAPAIRTFWQWLWEEGVISSKTPVEPGVVPEGLGLIARRDISRNEVVLQVPKRLWINPDAVTASEIGNVCSGLKPWVSVALFLIRERSRDESVWKQYFKILPEFTDSTIYWSEEELSELQGTQLLDTTLAVKEYVQNEFLKLEEEIILPNKKLFPSPITLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSFRVTTEDHAYEIKGAAGLFSWDYLFSLRSPLSVKAGEQIFIQYDLKKSNAELALDYGFIEPNSNRNAYTLTLQISESDPFYDDKLDIAESNGFGETAYFDIFFDRQLPPGLLSYLRLVALGGTDAFLLESIFRNSVWGHLESPVSHDNEELICRVVQDACKSALSGYHTTIEEDEKLKEEKLDSRLAIAVGIREGEKKVLQQIEGIFKEKELELDLLEYYQERRLKDLGLSGENGDILGDLSKFM 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0708 496 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 57 309 - -
Acco11g0708 496 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 318 489 IPR036464 -
Acco11g0708 496 SUPERFAMILY SET domain 58 317 IPR046341 -
Acco11g0708 496 CDD SET_RBCMT 80 310 IPR044431 GO:0016279|GO:0018022
Acco11g0708 496 Gene3D set domain protein methyltransferase, domain 1 57 310 - -
Acco11g0708 496 Pfam SET domain 88 294 IPR001214 GO:0005515
Acco11g0708 496 Gene3D - 311 475 IPR036464 -
Acco11g0708 496 Pfam Rubisco LSMT substrate-binding 327 451 IPR015353 -
Acco11g0708 496 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 12 494 IPR011192 GO:0009507|GO:0030785
Acco11g0708 496 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 311 475 - -
Acco11g0708 496 PIRSF RMT_SET 2 495 IPR011192 GO:0009507|GO:0030785
Acco11g0708 496 ProSiteProfiles SET domain profile. 71 295 IPR001214 GO:0005515
Acco11g0708 496 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 61 442 - -
Acco11g0708 496 SMART set_7 78 301 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0708 56 250 NAC Transcription Factor Family AT3G56570 27.805 2.03e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Acco11g0708 SET 2.2e-10 No_clan