Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0691 ATGGGATTTACGGTGGGCTGCACCGAGCTCGTCTTCCCAAAGCTCATCCTCCAGATCCTCGCCGTACTTGGAATCCTCAGGGGAATAACATCTTTCCTCCTTCGCCCCTTCGGCTTCAGCAATTTTCTCGAACAGGAAATTCAGTATTTTGGGAATTCCGACAATCCGTACTATCGTTATTATCCGACCCGGATGCCCGAATTCGAGTCTGCGAGCGCGGTGCTGATCCGAGAGATGCTGCCGGTGGCGAAGTTCTCTGAGCTGGTGGCGGAAGAGGTGGTGGCACCGGAGAGCTCTTGCGCCGTGTGCCTGAACGAATTTGATGGCGACGATGAGATCCGATGGCTTACAAACTGCCGCCACGTCTTCCACAAAGAGTGTCTTGACCGTTGGTTGGGATACGATCAGAAAACTTGTCCGTTGTGTCGATCACCGTTCATACCTGACCATTTGCAAGAAGATTTTAACGAGTCTCTGTGGGCTGCTTCTGGTATACCTGAATTTTACCCAGAATCTGATTCAGAATTATTATGA 534 0.5075 MGFTVGCTELVFPKLILQILAVLGILRGITSFLLRPFGFSNFLEQEIQYFGNSDNPYYRYYPTRMPEFESASAVLIREMLPVAKFSELVAEEVVAPESSCAVCLNEFDGDDEIRWLTNCRHVFHKECLDRWLGYDQKTCPLCRSPFIPDHLQEDFNESLWAASGIPEFYPESDSELL 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0691 177 SUPERFAMILY RING/U-box 75 149 - -
Acco11g0691 177 SMART ringv_2 99 143 IPR011016 GO:0008270
Acco11g0691 177 Pfam Ring finger domain 99 143 IPR001841 -
Acco11g0691 177 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 149 IPR013083 -
Acco11g0691 177 ProSiteProfiles Zinc finger RING-type profile. 100 143 IPR001841 -
Acco11g0691 177 PANTHER RING ZINC FINGER PROTEIN-RELATED 51 160 - -
Acco11g0691 177 SMART ring_2 100 142 IPR001841 -
Acco11g0691 177 CDD RING-H2_RHA1-like 97 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0691 Acco-ChrAcco11 11433201 11433734 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0691 1 164 C3H Transcription Factor Family AT1G63840 47.590 3.44e-47 150