Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0676 ATGTGTTTATATTGCTATATTAATATTTACTATATTCCCTCACCCGATCACTCTCTGGTTTTCTATAAAAACACATCTCTTACCGCTTCTCCGAATTCGCCGCTTCCTCGCTTACTCTCTCCTTCTCACTATCTCTACCCTCATCCTTCTACTCCTTCTCTGGTTTTGTTCGGAGCCATGTCGGACGAGGAGCACCACTTTGAGTCTAAAGCTGACGCCGGAGCTTCGAAGACCTACCCCCAGCAAGCTGGTACCATCCGCAAGAACGGTTACATTGTTATCAAAAACCGGCCTTGCAAGGTTGTGGAAGTTTCAACTTCCAAAACTGGTAAGCACGGACATGCTAAGTGCCACTTTGTTGGTATTGACATCTTCACTGGGAAAAAGCTTGAAGATATTGTTCCATCTTCCCACAACTGTGATGTCCCACATGTCAACCGTACTGACTACCAGCTGATTGACATCTCTGAAGATGGATTTGTGAGTCTTCTGACTGATTCTGGTGACACCAAGGATGATCTTAGGCTTCCAACCGATGAAAATCTGCTTAAGCAGATCAAGGATGGTTTCGGTGAGGGTAAAGATCTGGTCGTGAGTGTCATGTCTGCCATGGGAGAGGAGCAGATTTGTGCCCTGAAGGACATTGGCCCCAAGTAA 657 0.4597 MCLYCYINIYYIPSPDHSLVFYKNTSLTASPNSPLPRLLSPSHYLYPHPSTPSLVLFGAMSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDSGDTKDDLRLPTDENLLKQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0676 218 FunFam Eukaryotic translation initiation factor 5A 145 217 - -
Acco11g0676 218 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 109 116 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Acco11g0676 218 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 144 213 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Acco11g0676 218 NCBIfam translation initiation factor IF-5A 76 212 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Acco11g0676 218 CDD S1_eIF5A 145 215 - -
Acco11g0676 218 Gene3D - 145 217 IPR012340 -
Acco11g0676 218 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 60 216 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Acco11g0676 218 Gene3D - 60 144 IPR014722 -
Acco11g0676 218 FunFam Eukaryotic translation initiation factor 5A 60 144 - -
Acco11g0676 218 SUPERFAMILY Translation proteins SH3-like domain 74 152 IPR008991 -
Acco11g0676 218 SMART eIF_5a_2 144 213 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Acco11g0676 218 SUPERFAMILY Nucleic acid-binding proteins 145 215 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0676 Acco-ChrAcco11 10985546 10989128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0676 60 218 Eukaryotic Initiation Factors Gene Family AT1G13950 89.937 7.73e-103 292