Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0625 ATGGAGGAGACGAGGAAGTTTGTGTGCAGGTACTGCAACAAGAGGTTCCCAAGTGGGAAGTCACTGGGTGGTCACATTAGAACCCACATGAATCATCATTCAAGAAATAGGGCCATTACTGATTCAAGCAAGTTTGAAAGTGATGATGTTGATGATGAAGCTGCGAGAAGGAAGAGGAAGAAGAGAGATTTAAGTTCAGATTATGGGCTCAGAGAGAATCCCAAAAAAACAAAGAGGTTTGTTCATCCCTTCTTCACTTTACATTATAAGGAGAAGTTCTGTAGAGAATGTGGGAAAGGATTTACTTCTTTGAAAGCTCTATGTGGTCACATGGCATGTCACACTTCTGATAAACAGAAATTTGCAATAGTGGATGATGCTCAATCTGATACTGAAACTTCTGATCCAGAGGATTTGAAGAGAACAAGGTTCATGACCCTTAATAATAGGAATAATAATAACCCAACTTCATCTGTGTCAGAGGTTGAACAAGAAGGAGTAGAAGAGGTGGCTATTTGCTTGATGTTGTTGTCTAAGGGTTTTTATAGCCATAAAAGTGGTTTTGATTTGGAAAAAGAGTCTAATTCTGATAACTATTCTGCAATTGTAGAGGCCAAAGCCAAATCACACTCTGTTGATGCCAGAATTGCTATAAATGATGGTCAGAATAAGGTTAAGAACTCTATTCATAATGATACTTCTGAGATTGTGAAGGTGGGAAAGGACAGGACGAAGTTGAAGTTTTCAGATTCTGGGAATTCTAGATATGGTTCCAAAATGGAAGATTCAAATGTTTCAATTCATGGGGTTTTCAGGAATGATGTTTTTAATGGAGCAGAAGTGAAAGATGGGTATGGATTTAAGGATTATTATGTCTCTGAACCAAGGAAGATGATGAGCAACAGAAGCAGGAACAGTAGAGAATCCAAGAAACTAGTGTTGGGAAATTTAGACAAGTTTGATGATTCATTTAACAGTGCCAAACAAGAAAATGTTGGTAAAAATTTGGATGATCAAGTTTCCTGCAAAAAGAAGAAAACCAGTTTTCCCAATCATGAAGTCGTCTACAAAAAAGACTCATTTGAATCAGAATCATCATCATATGACAGTACTGATTCTGATTCTTTTCCTTATTCTTCTTATCAGAAGCCTAAGAGCAGTAACAAGCTGGCCAAGAGTAAGAAAGTGATGAAGTCGTCAAAGAAAACAAAGGAGCATGAGTGCCCAATTTGTAACAGAACTTTCAGGTCAGGTCAAGCCTTGGGAGGTCACAAAAGGTCCCATCTTGTAGGTGGATTTGAAGAGAACAACAAGAACAACAACAACCATGGATTAATAGTCCATCAAGAATCTCCTTCTCCTTCTCCTTCTGTTGTTCCTTGCCTGATTGATCTTAATCTACCTGCTCCTGCTGATGAATAG 1422 0.3826 MEETRKFVCRYCNKRFPSGKSLGGHIRTHMNHHSRNRAITDSSKFESDDVDDEAARRKRKKRDLSSDYGLRENPKKTKRFVHPFFTLHYKEKFCRECGKGFTSLKALCGHMACHTSDKQKFAIVDDAQSDTETSDPEDLKRTRFMTLNNRNNNNPTSSVSEVEQEGVEEVAICLMLLSKGFYSHKSGFDLEKESNSDNYSAIVEAKAKSHSVDARIAINDGQNKVKNSIHNDTSEIVKVGKDRTKLKFSDSGNSRYGSKMEDSNVSIHGVFRNDVFNGAEVKDGYGFKDYYVSEPRKMMSNRSRNSRESKKLVLGNLDKFDDSFNSAKQENVGKNLDDQVSCKKKKTSFPNHEVVYKKDSFESESSSYDSTDSDSFPYSSYQKPKSSNKLAKSKKVMKSSKKTKEHECPICNRTFRSGQALGGHKRSHLVGGFEENNKNNNNHGLIVHQESPSPSPSVVPCLIDLNLPAPADE 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0625 473 ProSitePatterns Zinc finger C2H2 type domain signature. 9 29 IPR013087 -
Acco11g0625 473 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Acco11g0625 473 ProSitePatterns Zinc finger C2H2 type domain signature. 408 428 IPR013087 -
Acco11g0625 473 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 472 - -
Acco11g0625 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Acco11g0625 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 406 428 IPR013087 -
Acco11g0625 473 Gene3D Classic Zinc Finger 1 68 - -
Acco11g0625 473 SMART c2h2final6 7 29 IPR013087 -
Acco11g0625 473 SMART c2h2final6 406 428 IPR013087 -
Acco11g0625 473 SMART c2h2final6 92 114 IPR013087 -
Acco11g0625 473 SUPERFAMILY beta-beta-alpha zinc fingers 403 429 IPR036236 -
Acco11g0625 473 SUPERFAMILY beta-beta-alpha zinc fingers 5 114 IPR036236 -
Acco11g0625 473 MobiDBLite consensus disorder prediction 360 403 - -
Acco11g0625 473 ProSiteProfiles Zinc finger C2H2 type domain profile. 7 34 IPR013087 -
Acco11g0625 473 MobiDBLite consensus disorder prediction 34 71 - -
Acco11g0625 473 Pfam C2H2-type zinc finger 94 114 - -
Acco11g0625 473 Pfam C2H2-type zinc finger 7 30 - -
Acco11g0625 473 Pfam C2H2-type zinc finger 406 428 - -
Acco11g0625 473 MobiDBLite consensus disorder prediction 31 71 - -
Acco11g0625 473 MobiDBLite consensus disorder prediction 366 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0625 Acco-ChrAcco11 10012196 10013617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0625 5 473 C2H2 Transcription Factor Family AT1G26610 37.030 2.70e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco11g0625 zf-C2H2_6 2.2e-11 CL0361