Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0575 ATGGCGATGCAAGGTGTGCAGAAGAACACGCTATACGTGGGGGGACTAGCGGAGGAGGTGAACGAGTCGCTTCTTCACGCTGCCTTCATACCCTTCGGCGACATCAAGGACGTCAAGACGCCGCTTGATCAGGCCACTCAGAAGCACCGCTCTTTCGGCTTTGTCACCTTCTTGGAGAGGGAGGACGCCACCGCCGCCATGGACAACATGGACGGCTCTGAACTTTACGGCCGTGTGCTTACTGTTAACTACGCCCTTCCTGAGCGCATTAAGGGCGGTGAACAGGGTTGGGCTGCTCAGCCAATTTGGGCGGATGCGGATACTTGGTTTGAACGGCAACAGCAAGAAGAGGAAATGCGTCGTATTGAGGCAGAAAATCGAGCTGCAATGCAGGCTGCAGAAGACATACGTAGAAAACAACTAGCACAAGAGAAAGAAGGAGAAAAGGAAGAGGAAATGGACATCAAGGATGATCCTATGGCAAAGGCTGAAGCAGAGGTTCTGAAAGAAAATGGTTCTTAA 522 0.5211 MAMQGVQKNTLYVGGLAEEVNESLLHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDATAAMDNMDGSELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRIEAENRAAMQAAEDIRRKQLAQEKEGEKEEEMDIKDDPMAKAEAEVLKENGS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0575 173 CDD RRM_PPIE 11 85 IPR034168 GO:0003723
Acco11g0575 173 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 80 IPR000504 GO:0003723
Acco11g0575 173 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Acco11g0575 173 PANTHER ATPASE E1 3 171 - -
Acco11g0575 173 FunFam Peptidyl-prolyl cis-trans isomerase 1 154 - -
Acco11g0575 173 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Acco11g0575 173 Coils Coil 112 158 - -
Acco11g0575 173 Gene3D - 2 152 IPR012677 -
Acco11g0575 173 MobiDBLite consensus disorder prediction 128 173 - -
Acco11g0575 173 SMART rrm1_1 10 83 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0575 Acco-ChrAcco11 9345133 9346978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0575 9 87 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 3.90e-11 58.5