Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0565 ATGGAGTTCAATCCACCAGAGACCTCTTCTCAACAAAAGAGAAAGCCCAAGAAAAAACGAAGCCGGGAAGACCCAGAGCTTGAACACCTGAACTCATTGTCGTGGAACCCCTCTCTTTCTGAACATGATGATCCTTTTTCTTTGGTTGTAGGCTCAAATGAACTTGAAGGAGGTTTCCTTTCACTGGAAGAGATTGATGAAGCTGAGTATGGTTTAGAAATTCCTCATCCCAAAGAAGGCAAGAGAAAGAAGAAGTCTAAAAATAAAGCAGATTTGAAGAAACAGAAGCTATGTGAAGTAGAGGGTGCCTCTAATGACGAGGTTGGCGTGAATTTTGAAGAAAACAAGGATGAGAGTGTGATGACTATAAAGAAGGTGAAGAAGAAGAAAAAGAAGGAGGAGGAGGAAGAGGAGGGGAAGGAAGCTGCTGATCAAGTTATTAATGTGAAAGATGATAATGATGAAGAGGACATTGATGAAATGGAATTTTTTGCATGGACTGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATTTACAAGCTTGGGTTCAAGGAACCCACGCCAATACAGAAAGTTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTTCTGAGACTGGATCTGGGAAAACTCTTGCCTTTGGTTTGCCCATTTTGCAACGCCTTTTAGAGGAGAGAGAGAAGGCTGCAAATATGGTTGAACAAAGGGGTGAAGAACCTGACAAATATGCTCCTTCTGGCGTTCTAAGGGCTCTCATAATTGCTCCAACTAGGGAACTTGCGCTGCAGGTCACTGATCATCTTAAAGCAGTAGCCAAATATATCAATGTTAGGGTGACTCCTATAGTCGGGGGCATTTTGGCAGAAAAACAGGAGAGACTCTTAAAAGCAAGGCCGGAGATTATTGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGGGAAAAGCATCTTGTCGAGTTACATTCCTTGTCATTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAGTGGGCATTTTAAAGAGTTGCAATCAATAATTGACATGCTTCCCATGCCCAACACGTTGGGTGGGGATGATCCTCAATCTGCCCAAGATTGCATCACAATTTCAAGCTGCCAAAGAAAGAAAAGACAAACTCTAGTCTTTTCGGCAACTGTTGCGCTCTCTGCTGATTTTCGCAAGAAGCTAAAGCGTGCTTCAACAAAACAAAATCAATCAGTGTTAGATGGATTCAATTCCATTGATGCCCTGTCTGAACGTGCAGGAATGAGACCCAATGCAGCAGTGATTGATCTCACTAATCCAACAATATTGGCAGCCAAGCTAGAAGAATCATTTATTGAATGCAAGGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACTGTCCATAAACAAGGCCGAACAATAGTATTCTGTACATCAATCGCAGCTTTGCGCCATATCTCTTCTTTACTGCGCATTCTTGGCATTAATGCTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGTTTCAAGGCTATTGATCGCTTTCGTGAAGATGAAAATGGCATACTTGTTGCTACTGATGTTGCAGCTAGGGGTCTTGATATTCCTGGTGTTAGGGCAGTTGTCCACTATCAGCTTCCACATTCAGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCCGAAGGGTGCAGTATTGCTTTGATCTCACCAAAAGATACAACAAAGTTTGCTTCATTGTGCAAGTCCTTCTCCAAGGACACATTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAAGTTCTAAAGCGATTGTCTATTGCCCGTCAAATAGACAAAATAACACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAATGCTGAATCAGTGGAGTTAGTTACGGAAAATGATGACAGTGAGGAGGAAAGAGTGAAGAAATTTAAGCAAATGAAAGTCAGCTCTGCTCAGTTGAAGAAGTTACAGCAGGATCTCAAAGCGCTTCTTTCACGCCCCTTACAATCAAAACAATTTTCGCATAGATACTTAGCAGGGGCGGGGGTCACTCCTCTGATGCAGGAACAGTTCCAACAATTAGCCAAGCAAAAGCAAGGAAGTGCTGGAGTAACTGGCAAGGGCAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCTCTTCAGGCTTTACGGAATGCTGGTGAAGAGGTGCGCATGGACGCCAAGAAAATGACAGGAAAGAGGATGGAGAATTTGAAACGAAAGAGAAAAGAAGAGAAAAAACGTTTGCATGACCAGCGAAGGAAGCAAAAGAGAAAGATGAAATTGGAGAATGAATAG 2385 0.4277 MEFNPPETSSQQKRKPKKKRSREDPELEHLNSLSWNPSLSEHDDPFSLVVGSNELEGGFLSLEEIDEAEYGLEIPHPKEGKRKKKSKNKADLKKQKLCEVEGASNDEVGVNFEENKDESVMTIKKVKKKKKKEEEEEEGKEAADQVINVKDDNDEEDIDEMEFFAWTELRLHPLLMKAIYKLGFKEPTPIQKVCIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKAANMVEQRGEEPDKYAPSGVLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIIVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQSGHFKELQSIIDMLPMPNTLGGDDPQSAQDCITISSCQRKKRQTLVFSATVALSADFRKKLKRASTKQNQSVLDGFNSIDALSERAGMRPNAAVIDLTNPTILAAKLEESFIECKEEDKDAYLYYILTVHKQGRTIVFCTSIAALRHISSLLRILGINAWTLHAQMQQRARFKAIDRFREDENGILVATDVAARGLDIPGVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTTKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKITRKDSQEKAQKSWFERNAESVELVTENDDSEEERVKKFKQMKVSSAQLKKLQQDLKALLSRPLQSKQFSHRYLAGAGVTPLMQEQFQQLAKQKQGSAGVTGKGKLVVIGQDCVEALQALRNAGEEVRMDAKKMTGKRMENLKRKRKEEKKRLHDQRRKQKRKMKLENE 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0565 794 CDD SF2_C_DEAD 451 580 - -
Acco11g0565 794 PANTHER RNA HELICASE 129 750 - -
Acco11g0565 794 SMART helicmild6 490 571 IPR001650 -
Acco11g0565 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 585 IPR027417 -
Acco11g0565 794 SMART ultradead3 183 423 IPR014001 -
Acco11g0565 794 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 164 192 IPR014014 GO:0003724
Acco11g0565 794 MobiDBLite consensus disorder prediction 751 768 - -
Acco11g0565 794 MobiDBLite consensus disorder prediction 1 44 - -
Acco11g0565 794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 359 IPR027417 -
Acco11g0565 794 MobiDBLite consensus disorder prediction 71 93 - -
Acco11g0565 794 Pfam Helicase conserved C-terminal domain 462 570 IPR001650 -
Acco11g0565 794 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 450 611 IPR001650 -
Acco11g0565 794 Coils Coil 224 244 - -
Acco11g0565 794 Coils Coil 757 788 - -
Acco11g0565 794 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 413 IPR014001 -
Acco11g0565 794 Coils Coil 667 687 - -
Acco11g0565 794 Coils Coil 116 152 - -
Acco11g0565 794 Pfam DEAD/DEAH box helicase 188 396 IPR011545 GO:0003676|GO:0005524
Acco11g0565 794 MobiDBLite consensus disorder prediction 751 794 - -
Acco11g0565 794 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 335 343 IPR000629 -
Acco11g0565 794 Gene3D - 447 689 IPR027417 -
Acco11g0565 794 Gene3D - 121 414 IPR027417 -
Acco11g0565 794 MobiDBLite consensus disorder prediction 769 786 - -
Acco11g0565 794 CDD DEADc_DDX24 175 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0565 Acco-ChrAcco11 9081347 9091659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0565 165 611 Eukaryotic Initiation Factors Gene Family AT5G11200 28.791 8.69e-40 151