LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g0526	ATGAGGGCTGGGAAAGGGAATCAGGAGGACTATGAGTACGATGAAGAAGAGTTTGGTTTTAGAAAAGAAGGTCCTTCGTCCACGCCTAATAGCAATAACACCAACAAAGATACAAAACCTCTTGATAAGGCTAGTGCTATAAGATCAAAACATTCAGTGACTGAGCAGCGAAGGCGGAGCAAGATAAATGAGAGATTCCAGTTATTAAGAGATCTCATACCTCATAGTGATCAAAAGAGGGATACTGCATCATTCCTATTAGAGGTCATTGAGTATGTCCAGTACTTACAAGAGAAGGTACACAAGTATGAAGGTTCATATCAGGGTTGGGGTCAAGAGCCCACAAAGTTGATGCCTTGGAGAAACAGTCATTGGCGAGTTCAAAGCTTTGGCCAACCTCAAGCTGTAAAGAATGGTTCTGGTCCTGTATCACCTTTTCCTGGGAAGTTTGACGAAAGCAACATTAGTGTCTCTCCAACTGTGCTCAGTGGTTCCCAGAATATCGTCGATCCTGAACAGAGCAGGGATATTGTAAGTAAAGCAGTGGAGAGGCAAGCTGAGTTAGAATGCAAGGGGATAACAATGCCAATGCCTATGCATGCAAGCATGTCTGTTCCTGTCAGAAGTGATGGTGCACTTGCCCGTCCTCTTCAGGGGCCTGTTTCTGATGGGCAATCGGCTGACTGTCCAGCCAATAGTGAACCTCAGAACCAACAGGAAGAGCTGACAATTGAAGGAGGAACGATTAACATCTCAAGTGCATACTCTCAAGGGCTGTTACACAATCTGACTCAAGCACTACAAAGTGCTGGTTTAGATCTCTCACAGGCTAGCATTTCAGTTCAAATTAACCTTGGGAAACGGGCAAACAAAGGGATGGGCTGTGGTACATCTGCTTCTATGAATCATGATAATATCCCATCTAGCAATCAAGCAATAACACATTTTAGAGATTCAGGCAACGGGGAAGACACAGATCAAGCTCAGAAGAGGCTGAAAACGTAG	1005	0.4438	MRAGKGNQEDYEYDEEEFGFRKEGPSSTPNSNNTNKDTKPLDKASAIRSKHSVTEQRRRSKINERFQLLRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVHKYEGSYQGWGQEPTKLMPWRNSHWRVQSFGQPQAVKNGSGPVSPFPGKFDESNISVSPTVLSGSQNIVDPEQSRDIVSKAVERQAELECKGITMPMPMHASMSVPVRSDGALARPLQGPVSDGQSADCPANSEPQNQQEELTIEGGTINISSAYSQGLLHNLTQALQSAGLDLSQASISVQINLGKRANKGMGCGTSASMNHDNIPSSNQAITHFRDSGNGEDTDQAQKRLKT	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g0526	334	SMART	finulus	52	102	IPR011598	GO:0046983
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	1	22	-	-
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	1	59	-	-
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	41	59	-	-
	Acco11g0526	334	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	44	118	IPR036638	GO:0046983
	Acco11g0526	334	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	46	96	IPR011598	GO:0046983
	Acco11g0526	334	Gene3D	-	44	116	IPR036638	GO:0046983
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	295	318	-	-
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	319	334	-	-
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	213	240	-	-
	Acco11g0526	334	CDD	bHLH_AtBIM_like	45	121	-	-
	Acco11g0526	334	Pfam	Helix-loop-helix DNA-binding domain	48	97	IPR011598	GO:0046983
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	225	240	-	-
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	294	334	-	-
	Acco11g0526	334	PANTHER	BES1-INTERACTING MYC-LIKE PROTEIN	5	334	IPR044295	GO:0003700\|GO:0006351\|GO:0046983
	Acco11g0526	334	FunFam	BHLH domain class transcription factor	44	116	-	-
	Acco11g0526	334	MobiDBLite	consensus disorder prediction	24	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g0526	Acco-ChrAcco11	8231545	8236914	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g0526	1	334	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G69010	54.142	3.66e-115	334

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Acco11g0526		HLH	3.5e-13	No_clan