Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0421 ATGTCTTTCGTAGTCACACTATACTCATTAATTGTTGGTGCTATTGCAAATGTTCCACTTCAAAAAGGTGGAACCAATAGAGTGATGAGAGAGAGAGAGAAGGAGTGTGTTCCAAGACACAATGATGACATGGTCTTGGAGAACCCTCCACAAAGGTTGAGGGATAGCAGCACAACAGCGATATACCTTCCCAAGCGAAGTGATGATTCAGTTTTCAGTCTAACACACGCATCAAAGCCTCCCCTCTTTCCCTTTTTCAGATTTCAACCAAATTCACAAAAACAAATTAAACCAATATCATATCACACACACACACACACACGTATATATAGCGAGACCCAGCATGAGAGAACAAGAACAACAAGAAGAACACATCCCTTGTTAATACTTATCAAAGGAACAAGGATGAAAATAGAGGAAGATCAAGGACAGTGTTCATCATCTTCTCAAGCCATCAATAACATTCAGAGCTATCAAGAACAGCTCCTTCTTCACGAAATGATGCTGCAGCAGGAAAACGCCGGCGTTTTGGGAGGTAATTCTTCTAATAATAATAATAACGACAGCGAAAGAGGATTGGTGTTCCCTGAGGTTTCTCCAATCTTTCATCCTCCGCCGCCACCACAGCCGCCATGGTCTCTCCCTCCGGTTCACTCCTTCAACCCGATCCGAGACACCGACCACCACCACCAGTTTTTAGCCCCTCCACCTTCCTCTTCTCTCTACGCCGGCGTCTTCAACCGGAGGGTTAATCCTTCTCTGCAATTCGCTTACGATGGTCCCTCCAATTCTGACCAACACCATCTCCGGATAATCTCTGACACCCTCGGGGTCGGACCGGTCGTGGGCCAACCCGGTTCAGTAGCCTCCTTCGGTCTCCAAGCGGAGCTGGTGGGCAAGATCACGGCTCAAGAAATCATGGACGCTAAAGCCCTCGCGGCTTCAAAGAGCCACAGCGAAGCCGAAAGAAGACGCCGAGAGAGAATCAACAACCACCTCGCCAAGCTTCGAAGCTTATTGCCCAACACAACCAAAACAGACAAAGCTTCTTTATTAGCAGAAGTAATCCAGCATGTGAAGGAGCTAAAGCATCAAACTTCAATAATAGCGGAAACCAGCCCTGTGCCCACGGAAACCGACGAACTGACGGTGGACGACGCTTCTGATGAGGATGGCCGGTTCGTGATCAAAGCCTCGCTTTGCTGTGAAGACAGGTCCGATCTCTTGCCGGACCTCATCAGGACGTTGAAGGCCCTAAGGTTGAGAACTGTCAAGGCGGAGATCACCACGCTCGGTGGACGCGTTAAGAACGTCTTGTTTGTCACCGGCGAAGAAGATGAGTCTGGCGGCGGCGATCACCAGCATTGTATAAGCTCCATACAAGAGGCTTTGAAGGCAGTGATGGACAAGAATGGTGGTGGTGGTGGTGATGAAAATGGGAATGTTAAGAGGCAAAGAACTAACAATAATATCAATATCCTTGAACAAAACAGGTCTTTATGA 1503 0.4784 MSFVVTLYSLIVGAIANVPLQKGGTNRVMREREKECVPRHNDDMVLENPPQRLRDSSTTAIYLPKRSDDSVFSLTHASKPPLFPFFRFQPNSQKQIKPISYHTHTHTRIYSETQHERTRTTRRTHPLLILIKGTRMKIEEDQGQCSSSSQAINNIQSYQEQLLLHEMMLQQENAGVLGGNSSNNNNNDSERGLVFPEVSPIFHPPPPPQPPWSLPPVHSFNPIRDTDHHHQFLAPPPSSSLYAGVFNRRVNPSLQFAYDGPSNSDQHHLRIISDTLGVGPVVGQPGSVASFGLQAELVGKITAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKHQTSIIAETSPVPTETDELTVDDASDEDGRFVIKASLCCEDRSDLLPDLIRTLKALRLRTVKAEITTLGGRVKNVLFVTGEEDESGGGDHQHCISSIQEALKAVMDKNGGGGGDENGNVKRQRTNNNINILEQNRSL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0421 500 FunFam transcription factor bHLH30 308 371 - -
Acco11g0421 500 MobiDBLite consensus disorder prediction 469 500 - -
Acco11g0421 500 SMART finulus 319 368 IPR011598 GO:0046983
Acco11g0421 500 Coils Coil 484 500 - -
Acco11g0421 500 MobiDBLite consensus disorder prediction 481 500 - -
Acco11g0421 500 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 368 IPR036638 GO:0046983
Acco11g0421 500 PANTHER TRANSCRIPTION FACTOR BHLH30 255 493 IPR045847 GO:0003700|GO:0006355
Acco11g0421 500 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Acco11g0421 500 CDD bHLH_AtAIG1_like 308 385 - -
Acco11g0421 500 Gene3D - 308 369 IPR036638 GO:0046983
Acco11g0421 500 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0421 Acco-ChrAcco11 6073938 6081355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0421 148 498 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.117 1.05e-104 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco11g0421 HLH 3.9e-12 No_clan