Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0408 ATGGACGCAGGAAGCTCCATGGACGAAAGCGTGACCACTGATTCAGTTTCTGTTTCCCTTTCTCCGGTGAAGATCACGTCGAACAAGTCATCGCCGCCACCGCCCAACAGTCTGTGCCGCGTCGGCAGCGGTGCTAGCACCGTCGTGGACTCGGACATCGTCGGAGTCGAAGCTGAGTCCCGGAAACTGCCATCGTCGAAATACAAAGGTGTCGTACCGCAGCCTAATGGCCGTTGGGGTGCTCAGATTTACGAGAAGCACCAGAGAGTATGGCTGGGCACTTTCAATGAAGAAGACGAGGCCGCGAGAGCTTACGACATCGCCGCGCAGCGATACCGTGGCCGAGACGCGGTCACCAATTTTAAGCCTCTTGCCGTCGCCGGAGTCAGCTCCGGCGCCGATGATGACCACGACGACTACGAAGCGGCGTTCCTCAACGCGCATTCGAAAGCCGAGATCGTCGATATGCTAAGGAAACACACTTACAATGACGAGCTGGACCAGTTCAAGCGAAACTACGGATTAACGGTGGACGCGAACGGGAAACGGATCATCAAGGAAGGATCCAATGGCTCGGGTCGGGTCAACGACGCGGCGCGTGATCAGCTATTTGAGAAAGCAGTGACACCGAGCGACGTTGGAAAATTGAATCGGTTGGTGATCCCGAAGCAGCACGCGGAGAAGCACTTTCCCTCGCCGTTGCCAGTGGGATTCTCCGCGCCGTACACGGCAGCGACGGCGGCCACCGCGAAGGGCGTATTGCTGAATTTCGAAGACGGCGGCGGGAAGGTTTGGAGGTTCAGGTATTCGTACTGGAACAGTAGCCAGAGCTACGTTCTGACGAAAGGATGGAGCCGGTTCGTGAAGGAGAAGAACCTCAAAGCCGGAGATACGGTTTTTTTCTCCCGGTCCACTGGACCCGACCAGCAACTGTACATCGACTGGAAGAACGCCAGAATTAGTACCACCACCACCACCTGTAATACTACAAATTCAGGTGGCGCCGCATTGTTTGAACCGGCCGGTCCAGTGGTGAGGCTCTTCGGGGTCAACATTTTGAAGATGCCCGGTTCAGATGCCATTTCTGCTGCTAGTGGGTGTTGCAATGGGAAGAGGAGAGAGGTGGACCTGTTCTCGTTGGAATGTACCAAAAAGCCAAAGATCATTGGAGCTTTGTAA 1179 0.5547 MDAGSSMDESVTTDSVSVSLSPVKITSNKSSPPPPNSLCRVGSGASTVVDSDIVGVEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRYRGRDAVTNFKPLAVAGVSSGADDDHDDYEAAFLNAHSKAEIVDMLRKHTYNDELDQFKRNYGLTVDANGKRIIKEGSNGSGRVNDAARDQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPSPLPVGFSAPYTAATAATAKGVLLNFEDGGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVFFSRSTGPDQQLYIDWKNARISTTTTTCNTTNSGGAALFEPAGPVVRLFGVNILKMPGSDAISAASGCCNGKRREVDLFSLECTKKPKIIGAL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0408 392 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Acco11g0408 392 FunFam AP2 domain-containing protein RAP2.8 66 123 - -
Acco11g0408 392 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Acco11g0408 392 ProSiteProfiles B3 DNA-binding domain profile. 204 319 IPR003340 GO:0003677
Acco11g0408 392 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Acco11g0408 392 Gene3D - 193 330 IPR015300 -
Acco11g0408 392 Pfam B3 DNA binding domain 204 315 IPR003340 GO:0003677
Acco11g0408 392 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
Acco11g0408 392 MobiDBLite consensus disorder prediction 1 38 - -
Acco11g0408 392 CDD B3_DNA 203 304 IPR003340 GO:0003677
Acco11g0408 392 SMART B3_2 204 319 IPR003340 GO:0003677
Acco11g0408 392 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Acco11g0408 392 SUPERFAMILY DNA-binding pseudobarrel domain 203 312 IPR015300 -
Acco11g0408 392 MobiDBLite consensus disorder prediction 6 38 - -
Acco11g0408 392 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Acco11g0408 392 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 62 362 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0408 Acco-ChrAcco11 5867761 5868939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0408 1 392 B3 DNA Binding Superfamily AT1G25560 58.500 4.29e-141 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Acco11g0408 B3 5.4e-28 CL0405