Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0406 ATGCAGACTCAGTACCCTAATTTCTCCTTTTTCTCGTCATGTTTAAAACCTCAAGAGCAAGACGAACACTCCATTTCCCTCTCTCTCGGACCTCCTGGCCAACACAACATTTCTTCCAATAAGGTGAACCCCACTGTTACTACTACTTGTTCTTCGTCCAACGGCGTCGCATCACTACATCAACACCAAAACCCTAACTCTGATCTTGGCGTCACCGTCGCCCTCCACATCGGCCTCCCTGCAGCTGCCACCACTAACAGTGCTGCTGGTGATGGTTCTAATAGCAATAAACCCGACCCATTAATGAGTTCGTCGTCTTCTTCGGGTCATGTTCCGGGTCAGTATTGGATTCCTTCCCCTGCCCAGATCCTCATCGGGCCCACCCAATTCTCTTGCTCTGTCTGCAACAAAACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGACCGGAATCACTGAGAGGGGCAAAACCAGCGTCTTCAATTCTGAGACTGCCATGTTATTGTTGCGCCGAAGGTTGTCGGAACAACATCCACCATCCGAGGTCGAGGCCTTTGAAGGATTTCAGGACACTTCAGACACACTACAAGCGCAAGCACGGCGCCAAGCCCTTCGGCTGCCGGAAGTGCGGCAAGGCGTTTGCCGTCAGAGGAGACTGGAGGACCCACGAGAAGAATTGCGGCAAGCTCTGGTTTTGTATCTGTGGCTCTGATTTTAAGCACAAAAGATCCCTCAAAGACCACGTTCGATCCTTCGGTGACGGCCATGCTCCTCACACCGTCGACAGCCGGGACCACCACCACCACCAAGAGTTAGAAGAAGTCGACGATGATGAAGACGAAGACGATGAATTAGAAGATGATGATAATAACAGTGACGTGTTTGTCTACAGCGGAAATCATGCCTCCATTTATTTCTGA 951 0.5037 MQTQYPNFSFFSSCLKPQEQDEHSISLSLGPPGQHNISSNKVNPTVTTTCSSSNGVASLHQHQNPNSDLGVTVALHIGLPAAATTNSAAGDGSNSNKPDPLMSSSSSSGHVPGQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSILRLPCYCCAEGCRNNIHHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRSFGDGHAPHTVDSRDHHHHQELEEVDDDEDEDDELEDDDNNSDVFVYSGNHASIYF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0406 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Acco11g0406 316 MobiDBLite consensus disorder prediction 86 110 - -
Acco11g0406 316 SUPERFAMILY beta-beta-alpha zinc fingers 200 235 IPR036236 -
Acco11g0406 316 SMART c2h2final6 215 235 IPR013087 -
Acco11g0406 316 SMART c2h2final6 130 152 IPR013087 -
Acco11g0406 316 Gene3D Classic Zinc Finger 129 152 - -
Acco11g0406 316 SUPERFAMILY beta-beta-alpha zinc fingers 123 152 IPR036236 -
Acco11g0406 316 PANTHER ZINC FINGER PROTEIN WIP2 19 289 IPR043584 GO:0003700|GO:0010468
Acco11g0406 316 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Acco11g0406 316 MobiDBLite consensus disorder prediction 85 110 - -
Acco11g0406 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 235 IPR013087 -
Acco11g0406 316 MobiDBLite consensus disorder prediction 264 283 - -
Acco11g0406 316 Gene3D Classic Zinc Finger 173 262 - -
Acco11g0406 316 FunFam Zinc finger protein WIP2 184 266 - -
Acco11g0406 316 MobiDBLite consensus disorder prediction 264 303 - -
Acco11g0406 316 MobiDBLite consensus disorder prediction 284 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0406 Acco-ChrAcco11 5832257 5833757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0406 21 274 C2H2 Transcription Factor Family AT1G13290 69.804 4.98e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco11g0406 None None None