Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0401 ATGGCTCATTTCGCAATAGGCGTGACCTTCCGTTCCCCACCTCCTCCGCCGGGGAAGGCGTACACCACGTCGCCGGTGATGGTAGCTTTCGCGCTCGGCGTGGTCATATGTCTCGTCGTAGGTGTCTTCTTAGCCTACTTTTGCCGATGTTTCGTCATTAATTGCATCTACACCCGGGCCTTCCGTCGTCCCACCGTCAACAACCTCCTCCGCCAGATCTATTCCCCTAACCATGAAGCCAACACCGCGTCTCCGATCCCCGGCATCAACCCTGCACTGCTCCAAATCTTTCCCACCTTCCCCTACGCCTCCGTGAAGGAGTTCCAAAAAAAGAACAACAATAACAAAAGCTACAGCCTAGAATGTGCGATTTGCTTGTTGGAATTCGAGGAAGATAGCTTCCTTCGCCTAATAACCTTTTGCTGCCATGTTTTTCACCAAGAATGTATCGACCTATGGCTTGAATCTCACAAGACATGCCCTATTTGTCGAACAGATCTTGATTCCTCGTCAAAGGAAAAACATCAAGATCAAAATCAGACAATAATAACAGAGAATAATCCCGACCACAACGACAACGAGACACGTATCAATGTAAGGGAAGAAGACGGAGAAGAAGAAGAATGGGTTTCAGGGAGAAGAGAAGAGGAGGATGAAGAAGAAGAAGAAGAAGGTGTTTCAGGGGAAGGAGATGAAGAGAAGAGATTGTCAAAGTCACATTCAACGGGTCATTCTATAGTGGTGATAAAAGGCGACGATGACGATAAGAAGGAGAATAATAAAGAAGATAAGTATACGTTGAGATTACCAGAACATGTTAGAATGAAACTGATGAGGAGACATAATAATCACACATCAAAGAGTTGTGAATCTTACATGGAGATGACCAAACTTTGTAGTAAAATGTTGCTATGTTGA 918 0.4521 MAHFAIGVTFRSPPPPPGKAYTTSPVMVAFALGVVICLVVGVFLAYFCRCFVINCIYTRAFRRPTVNNLLRQIYSPNHEANTASPIPGINPALLQIFPTFPYASVKEFQKKNNNNKSYSLECAICLLEFEEDSFLRLITFCCHVFHQECIDLWLESHKTCPICRTDLDSSSKEKHQDQNQTIITENNPDHNDNETRINVREEDGEEEEWVSGRREEEDEEEEEEGVSGEGDEEKRLSKSHSTGHSIVVIKGDDDDKKENNKEDKYTLRLPEHVRMKLMRRHNNHTSKSCESYMEMTKLCSKMLLC 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0401 305 SMART ring_2 122 163 IPR001841 -
Acco11g0401 305 SUPERFAMILY RING/U-box 121 169 - -
Acco11g0401 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 172 IPR013083 -
Acco11g0401 305 MobiDBLite consensus disorder prediction 189 207 - -
Acco11g0401 305 MobiDBLite consensus disorder prediction 165 263 - -
Acco11g0401 305 MobiDBLite consensus disorder prediction 208 228 - -
Acco11g0401 305 FunFam E3 ubiquitin-protein ligase ATL6 77 170 - -
Acco11g0401 305 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Acco11g0401 305 MobiDBLite consensus disorder prediction 247 263 - -
Acco11g0401 305 PANTHER RING FINGER DOMAIN-CONTAINING 22 174 - -
Acco11g0401 305 SMART ringv_2 121 164 IPR011016 GO:0008270
Acco11g0401 305 Pfam Ring finger domain 121 164 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0401 Acco-ChrAcco11 5767123 5768040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0401 88 279 Rapid Response to Elicitors AT2G35000 33.166 2.19e-30 116