Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0388 ATGGCTTCCGATGCGCATGGCTCCCGTCGCAAGCACCGGCATTCGTCTTCTCCTGAACAAGTCGAACGATCTTCGAAGCGTCACAAGCACCGCCATGGTAACCGCCATCATCGGCACCGCCACGGGAGCAGGAAACGCGAAGAAGAGCTTGAACTCGATATCGAAACTGTTGATAAGGTTCCCTCTCCAACTCCTGCGCCTAATTTTGATCCGAAGATCCCTAGGCCTGACGATGATGTGGAGGAGGGGGAGATTCTTGAAGAAGAGGGTTTCGGTGGCCGAGATGGTGAGATTCGAAAAAAGCATACAGAATCGGATGCTGAGTCTGGTGAAATTATGGCCACGGGAGGTCGAGGTATTCGATCCGACAATTCAAATCCGGTAAATTTCAGTGAAGAGATTTTGCATCAGAACGATGCCATTCCTTCTAAAGAGGCAGTAGGGTTCAATGGTAAAGGCCCAGAAACTAACAATGAGAATATCAGCAATGGTAGATTTATTAGGCCAGGGTCGGATGGAGAACATGATACTTGCCATCAGAGGCACACTGGTTATAGGAGAAATGAAGTTGATGGTTCTTCTACTCATTCTAGTGCTGAGTCTCTAGATGGCAAGCGTGCTAGAGCTAGTTCAGATGGTTTGGGCAATGGGCATTTGGATCGTAAATTTTCCAAAGAGGATAAATGGCAATATGGGGAGCTTGGACGTTTTAAAGAAAATGAGAAGCTGAAAGGTGACTATGATAATGAAGTTAATGAAGGCAAAGTAAGGAGTCACAGAAAGAACTCCTCCCCTGAAAGTGGAGGCGGCAAATATAGGACCAGGGATAGCTCACCTAGTTATAGGTGTAGGAGTCGATCCAGATCTAGTAGTCATACTCATAATGTAGTAGAAGAATATTCTCATCGCAGGAGAAGGAATGATGAGGAAAGAATTGGCGAGTATGGCTGGGAGCGTGGACATGTTAGTACAGATTTGATGGCAGGTGACATAAGGGAGCGTCGGGAGGCCCGGGATAGAAGCAGGAGCAAGGACAGGGATGGGTATAGGGACCTCAGAAGGGAAAAGGAACGAGAAAGGAGCTGGAATAGGGAGGATGACCGTGTGCATAGGAGGGAAAAAGAACGTGAAAAGAGTCATGAGAAGGATAGAAGGGATGCAGAAAAAGATAGGAGGAAGGGAAGAGAGGTGGACAGGGATAGAAGAAGAGAAAAGGAGAGAGATAGAGATAGGAGCTGGGACAGAGCAAGGGTTGGAGAGAGGGATAGAGTCCGGGGGAGTGAAAGGGATGATGAGCATCGAGAAAGAGAAAAGATTAGGGAGAGGGAGAGGCATAAGGATAGAAACACTCTTGATAAAGATAAAAATCTGGGTTATTGGCATGGTAATGAGAGCCGGGACAGAGATATGCGCTCTAGTCATTCAAGGCATGAAGAAGCAGAAAGCCATCGTGAGAGAAAAAGAAATTCTGAGTCTGTGAAAATCGATAACCATATGGACAGAGGTGAGGTTGAACAGGATGATTTAGATGAGACAGCTACACTGCAATTTGCTGAACAAGAAGAGGAAGATCTGAATAGAATTAAGGAGGAGAGTAGGAGGAGGAGGGAAGCAATTTTAGAGAAATATAAAAAGCTGCAACCACAGCATCATCAACAAGCTGAACAAACTTCTGAAAATAAAGAAAAAGATAAGGATCCTGTGAATATTCCAGCTGCTGTTTCTGAAGCTCCTGATGCTAAGAATGATGGTATTGATGTTTTTGAAGTGGAACCATCTTTCACTGTTAGTAAATCTCCTCAAGAAAATGGGAATGATGCATCTGAGAAGATCCCTGGTGTTGCTCGGCGCTTGGGAGAGGGAACTCCAAAGAGTGAAAGGTCTGATGATGAATTCTGTGATGACATATTTGGTGAGACACCAACAGGAGTTCACAGAATGGGTAAAGGGGATGGATTGCGTGTTGACAGGGGTGGATTGAATGACAATTGGGATGATGCGGAGGGGTATTACAGCTATCGATTTGGTGAGATACTTGATGGTCGATATGAAGTTATAGCAGCTCATGGTAGAGGTGTCTTTTCAACAGTTGTTCGTGCAAAGAATCTCAAGGCTGGTAATGGTGAGCCAGAGGAAGTAGCTATAAAAATTATTCGTAATAATGACACTATGTACAAGGCTGGTATGGATGAGTTGGTCATACTAAAGAAATTAGTAGGTGCAGATCCAGATAATAAGCGTCATTGTGTTCGTTTCCTTTCGAGTTTTAAGTACAGGAATCACCTTTGTTTAGTTTTTGAATCTCTATATATGAATCTGCGAGAGGTTTTAAAGAAGTTTGGTCGCAATATTGGCCTTAATCTAAAAGGTGTGCAATCGTACGCAAAACAACTTTTTATTGCACTGAAGCATCTTCGCAACTGTGGCGTTCTTCATTGTGATATAAAGCCAGACAATATGTTGGTGAATGAGGCAAAAAATGTATTGAAGCTTTGTGACTTTGGTAATGCTATGTTTGCTGGAAAGAATGAAGTTACACCATATCTTGTGAGTCGGTTTTATCGTGCCCCTGAAATAATACTTGGCTTGCCATATGATCATCCGTTGGATATGTGGTCTGTTGGCTGTTGTTTGTATGAACTCTATACTGGAAAAGTTCTTTTCCCAGGTCATACTAATAATGATATGCTAAGGCTTCACATGGAATTGAAGGGCCCTTTTCCAAAGAAGATGCTTCGTAAGGGAGCTTTTGTTGATCAACATTTTGACCAAGATTTGAATTTTCTTGCTACAGAAGAGGATCCGGTGACAAAAAAGGCTATAAAGCGGTTGATTCTCAACATAAAGCCCAAAGATATTGGAACTATTGTTGCTGGCTCTCCTGGAGAGGAGGCGGATCGAAAGAAGCTAGCCAATTTCAAAGATCTTCTGGACAAGATTTTTGTCCTGGATCCAGAGAAGAGATTGACAGTCTCACAAGCATTAGGCCACCCATTCATCACTGGCAAGTGA 3012 0.4356 MASDAHGSRRKHRHSSSPEQVERSSKRHKHRHGNRHHRHRHGSRKREEELELDIETVDKVPSPTPAPNFDPKIPRPDDDVEEGEILEEEGFGGRDGEIRKKHTESDAESGEIMATGGRGIRSDNSNPVNFSEEILHQNDAIPSKEAVGFNGKGPETNNENISNGRFIRPGSDGEHDTCHQRHTGYRRNEVDGSSTHSSAESLDGKRARASSDGLGNGHLDRKFSKEDKWQYGELGRFKENEKLKGDYDNEVNEGKVRSHRKNSSPESGGGKYRTRDSSPSYRCRSRSRSSSHTHNVVEEYSHRRRRNDEERIGEYGWERGHVSTDLMAGDIRERREARDRSRSKDRDGYRDLRREKERERSWNREDDRVHRREKEREKSHEKDRRDAEKDRRKGREVDRDRRREKERDRDRSWDRARVGERDRVRGSERDDEHREREKIRERERHKDRNTLDKDKNLGYWHGNESRDRDMRSSHSRHEEAESHRERKRNSESVKIDNHMDRGEVEQDDLDETATLQFAEQEEEDLNRIKEESRRRREAILEKYKKLQPQHHQQAEQTSENKEKDKDPVNIPAAVSEAPDAKNDGIDVFEVEPSFTVSKSPQENGNDASEKIPGVARRLGEGTPKSERSDDEFCDDIFGETPTGVHRMGKGDGLRVDRGGLNDNWDDAEGYYSYRFGEILDGRYEVIAAHGRGVFSTVVRAKNLKAGNGEPEEVAIKIIRNNDTMYKAGMDELVILKKLVGADPDNKRHCVRFLSSFKYRNHLCLVFESLYMNLREVLKKFGRNIGLNLKGVQSYAKQLFIALKHLRNCGVLHCDIKPDNMLVNEAKNVLKLCDFGNAMFAGKNEVTPYLVSRFYRAPEIILGLPYDHPLDMWSVGCCLYELYTGKVLFPGHTNNDMLRLHMELKGPFPKKMLRKGAFVDQHFDQDLNFLATEEDPVTKKAIKRLILNIKPKDIGTIVAGSPGEEADRKKLANFKDLLDKIFVLDPEKRLTVSQALGHPFITGK 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0388 1003 FunFam serine/threonine-protein kinase PRP4 homolog 654 742 - -
Acco11g0388 1003 MobiDBLite consensus disorder prediction 595 633 - -
Acco11g0388 1003 MobiDBLite consensus disorder prediction 25 43 - -
Acco11g0388 1003 Coils Coil 515 538 - -
Acco11g0388 1003 MobiDBLite consensus disorder prediction 520 569 - -
Acco11g0388 1003 SUPERFAMILY Protein kinase-like (PK-like) 670 1002 IPR011009 -
Acco11g0388 1003 SMART serkin_6 683 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g0388 1003 Coils Coil 370 391 - -
Acco11g0388 1003 MobiDBLite consensus disorder prediction 325 505 - -
Acco11g0388 1003 MobiDBLite consensus disorder prediction 218 266 - -
Acco11g0388 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 810 822 IPR008271 GO:0004672|GO:0006468
Acco11g0388 1003 MobiDBLite consensus disorder prediction 1 583 - -
Acco11g0388 1003 PANTHER DUAL SPECIFICITY PROTEIN KINASE 396 1001 - -
Acco11g0388 1003 Gene3D Phosphorylase Kinase; domain 1 654 742 - -
Acco11g0388 1003 Gene3D Transferase(Phosphotransferase) domain 1 743 1001 - -
Acco11g0388 1003 ProSiteProfiles Protein kinase domain profile. 683 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g0388 1003 MobiDBLite consensus disorder prediction 87 108 - -
Acco11g0388 1003 Pfam Protein kinase domain 684 1000 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco11g0388 1003 MobiDBLite consensus disorder prediction 291 318 - -
Acco11g0388 1003 FunFam Serine/threonine-protein kinase PRP4 homolog 743 1001 - -
Acco11g0388 1003 MobiDBLite consensus disorder prediction 119 133 - -
Acco11g0388 1003 MobiDBLite consensus disorder prediction 169 189 - -
Acco11g0388 1003 CDD STKc_PRP4 682 1000 IPR044092 GO:0004674|GO:0006468|GO:0045292
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0388 Acco-ChrAcco11 5594534 5601467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0388 679 1001 MAP Kinase Gene Family AT1G59580 31.268 3.30e-26 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Acco11g0388 Pkinase 4.2e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g0388 11 5594534 5601467 Acco11g0388 11 5594534 5601467 ECH