Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0378 ATGAAGATTTTCGTCAAGACTCTGAAAGGCACTCACTTCGAAATTGAAGTGAAGCCAGAAGACACGGTTACTGAAGTGAAGAAAATTATAGAAACTGTTCAGGGCGCAGATGTCTATCCCGCAGCACAACAGATGCTTATCCATCAAGGGAAGGTCCTCAAAGATAGCACCACCTTGGAGGAAAATAAAGTGGTTGAAAATAGTTTTGTAGTAATTATGCTTTCTAAGAGCAAAAGCTCATCTGGTGAGGGTTCTACTACTACAGCTGCACCTTCAACCAAGGCCCCAGCTGCAAGTGCTGCTCCCACCCTCTCTTCTGCTGCAAGTTCAACCACGCCTCAAGCTCCTGCTGCTGCGCCTGCCCCTTCTCCTGCACCGGCACTGGCACCGGCCCCTGCCCCTGCTCCTGCCCCCGCTTCTGCCCCTGCCCCTGCTCCTGCTCCTGCTGCTTCAGGCACAGCTGTGTCAGAGTCTGATGTCTATGGACAGGCAGCATCTAACCTTGTAGCTGGAAGCAACTTAGAGGAAACCATTCAGCAAATGCTTGATATGGGTGGAGGGAGCTGGGAAAGGGATACTGTAGTTCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTTGAATATTTGTACTCAGGTATTCCAGAGCAAGCTGAAGCTCCTCCTGTGGCACAAGTGCCTGCAAATCCCCAAACTGCAAATCCTCCTGCACCAGCTCCACAAGCTGCACAGCCAGCGCCTGCTCCTACAAGTGGACCAAACGCGAATCCTTTAGACCTTTTTCCTCAGGGCCTTCCCAATGTTGGTTCTGGTGCCGCTGGTGCTGGCACCCTAGATTTTTTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCAAATCCACAAATACTCCAGCCTATGCTTCAAGAGCTTGGGAAGCAAAATCCTCATCTTATGAGATTGATTCAAGAGCACCAGGCTGACTTCCTTCGCCTGATAAATGAACCAGCGGAAGGTGGTGAGGGGAACATATTAGGGCAGCTGGCTGGTGCCATGCCCCAACAAATAGCTGTCACCCCTGAGGAGCGAGAAGCAATTGAACGACTTGAAGCTATGGGTTTTGATCGTGCTCTCGTATTGGAGGTATACTTTGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGACTGA 1218 0.5033 MKIFVKTLKGTHFEIEVKPEDTVTEVKKIIETVQGADVYPAAQQMLIHQGKVLKDSTTLEENKVVENSFVVIMLSKSKSSSGEGSTTTAAPSTKAPAASAAPTLSSAASSTTPQAPAAAPAPSPAPALAPAPAPAPAPASAPAPAPAPAASGTAVSESDVYGQAASNLVAGSNLEETIQQMLDMGGGSWERDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVAQVPANPQTANPPAPAPQAAQPAPAPTSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPAEGGEGNILGQLAGAMPQQIAVTPEEREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFED 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0378 405 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Acco11g0378 405 NCBIfam UV excision repair protein Rad23 1 404 IPR004806 GO:0006289
Acco11g0378 405 MobiDBLite consensus disorder prediction 230 254 - -
Acco11g0378 405 Gene3D - 1 80 - -
Acco11g0378 405 FunFam UV excision repair protein RAD23 homolog 167 217 - -
Acco11g0378 405 Gene3D - 271 336 IPR036353 GO:0003684|GO:0006289|GO:0043161
Acco11g0378 405 PRINTS DNA repair protein Rad23 signature 387 402 IPR004806 GO:0006289
Acco11g0378 405 PRINTS DNA repair protein Rad23 signature 306 328 IPR004806 GO:0006289
Acco11g0378 405 PRINTS DNA repair protein Rad23 signature 355 371 IPR004806 GO:0006289
Acco11g0378 405 PRINTS DNA repair protein Rad23 signature 372 386 IPR004806 GO:0006289
Acco11g0378 405 SMART CBM 278 321 IPR006636 -
Acco11g0378 405 Gene3D - 352 400 - -
Acco11g0378 405 FunFam UV excision repair protein RAD23 1 80 - -
Acco11g0378 405 FunFam UV excision repair protein RAD23 homolog 352 400 - -
Acco11g0378 405 CDD Ubl_Rad23 1 74 - -
Acco11g0378 405 Gene3D - 167 217 - -
Acco11g0378 405 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Acco11g0378 405 MobiDBLite consensus disorder prediction 77 116 - -
Acco11g0378 405 SUPERFAMILY UBA-like 342 403 IPR009060 GO:0005515
Acco11g0378 405 Pfam UBA/TS-N domain 174 212 IPR015940 -
Acco11g0378 405 Pfam UBA/TS-N domain 361 396 IPR015940 -
Acco11g0378 405 MobiDBLite consensus disorder prediction 225 265 - -
Acco11g0378 405 MobiDBLite consensus disorder prediction 117 145 - -
Acco11g0378 405 Pfam XPC-binding domain 280 336 IPR015360 GO:0003684|GO:0006289|GO:0043161
Acco11g0378 405 FunFam UV excision repair protein RAD23 B 271 336 - -
Acco11g0378 405 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Acco11g0378 405 SMART ubq_7 1 75 IPR000626 GO:0005515
Acco11g0378 405 SUPERFAMILY UBA-like 171 222 IPR009060 GO:0005515
Acco11g0378 405 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 172 215 IPR015940 -
Acco11g0378 405 SMART uba_6 361 398 IPR015940 -
Acco11g0378 405 SMART uba_6 174 214 IPR015940 -
Acco11g0378 405 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 358 399 IPR015940 -
Acco11g0378 405 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 394 - -
Acco11g0378 405 CDD UBA1_Rad23_plant 168 217 - -
Acco11g0378 405 MobiDBLite consensus disorder prediction 77 153 - -
Acco11g0378 405 SUPERFAMILY XPC-binding domain 276 342 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0378 Acco-ChrAcco11 5462789 5467376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0378 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 39.189 6.40e-08 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g0378 11 5462789 5467376 Acco11g0378 11 5462789 5467376 ECH