Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0374 ATGCCGGAGCCTCGAAATCAGCTGTCAAATCAGTCCATGAATCTGAACAATCCCTGCAAAAGGATGAAGCAACAGAAGCAAAACCCTGTTCCGACGAGAAAGCTTCGCATAATCTGTGACGACCCTTATGCCACAGATTCATCTTCAAGCGAAGACGAAGGAGGAAACCAACGATCCGACACTCGTCGGCCGAGGAAGATGAAGCGAATCGTTCGTGAACTCACTCTCCCTGTTGCTGCTGCCATTTCTAAATCCACTGAAAGTGAAAGCTCATTTCAGGACTCCAACAATGGAGTCACCACCAAGTTTGCAGATGTTCAAACCCAGAACAAGAAGAGGGTTTTGACCAAAACCCTATTATCAACGAAAAGCTCGTCTTCTTCCAGATTCAGAGGCGTCCGACAGAGAAAATGGGGGAAATGGGCTGCTGAAATTCGTGATCCCTTCAAAGGTGTTCGTATCTGGCTTGGTACTTACAATACTGCCCAGGAAGCTTCTCAAGCTTATGAAAAAAAGAAGATGGAGTTCGAAGCCAAGGCTAAGGCTCAACTACTTGCTCTAGCTCAATCTGATAAGAGTCGCATTGTTTCTTCTTCCTCTGCCCATCAAGTTGCTGCATCTGCATCAGAAGATTCAGGGAGTGTCTTCTCCCAAACCTCACCTTCCTCTGTGCTTGAACTTGATACCTCAACTTCCAAATCCTCTGAAGATGTTGCTAACATCAACAACAGCAGTTCTAGCATAGAACATAAAGAAGAACATGAAGAGAATAAGCAAGAAGAACAAGCAGCAGCAGAAGTGGTAGCTTCTGCTATACCTATGGAGGCTGATAGCTTTGAGAACGAATTTGCAGAACTTCAAATCCCAGATTTGAGCTTCCTGAACGAGCCACCGTTAGAAGAAGCATGGCCACTATCACCAACATCATCATCATCTGCAGCAGCAGCAGCAGCAGATGTTTCAGACATAAACCTAGGATTTGATCTGGACTGGGCTGTTTTTGATGATTTTAGTAATGGTTTGGAGGATCCTTTTGGTTTGGATGACATGCAGATTTGTGGGTTTGATGAGGATGACATGAATGCGAATGAGCTGCCTGATTTTGATTTTGATCTTGATCCGTGTGCTGATGAGTTTGCTGGTTGGACTGAGGAGCCCCTCTTTATACCTTGCGTATAA 1179 0.4495 MPEPRNQLSNQSMNLNNPCKRMKQQKQNPVPTRKLRIICDDPYATDSSSSEDEGGNQRSDTRRPRKMKRIVRELTLPVAAAISKSTESESSFQDSNNGVTTKFADVQTQNKKRVLTKTLLSTKSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYEKKKMEFEAKAKAQLLALAQSDKSRIVSSSSAHQVAASASEDSGSVFSQTSPSSVLELDTSTSKSSEDVANINNSSSSIEHKEEHEENKQEEQAAAEVVASAIPMEADSFENEFAELQIPDLSFLNEPPLEEAWPLSPTSSSSAAAAAADVSDINLGFDLDWAVFDDFSNGLEDPFGLDDMQICGFDEDDMNANELPDFDFDLDPCADEFAGWTEEPLFIPCV 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0374 392 CDD AP2 129 169 IPR001471 GO:0003700|GO:0006355
Acco11g0374 392 MobiDBLite consensus disorder prediction 247 262 - -
Acco11g0374 392 Coils Coil 159 179 - -
Acco11g0374 392 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 272 - -
Acco11g0374 392 Pfam AP2 domain 128 177 IPR001471 GO:0003700|GO:0006355
Acco11g0374 392 PRINTS Ethylene responsive element binding protein signature 152 168 IPR001471 GO:0003700|GO:0006355
Acco11g0374 392 PRINTS Ethylene responsive element binding protein signature 130 141 IPR001471 GO:0003700|GO:0006355
Acco11g0374 392 MobiDBLite consensus disorder prediction 53 68 - -
Acco11g0374 392 SUPERFAMILY DNA-binding domain 128 176 IPR016177 GO:0003677
Acco11g0374 392 MobiDBLite consensus disorder prediction 1 31 - -
Acco11g0374 392 MobiDBLite consensus disorder prediction 1 68 - -
Acco11g0374 392 SMART rav1_2 129 192 IPR001471 GO:0003700|GO:0006355
Acco11g0374 392 ProSiteProfiles AP2/ERF domain profile. 129 188 IPR001471 GO:0003700|GO:0006355
Acco11g0374 392 MobiDBLite consensus disorder prediction 226 246 - -
Acco11g0374 392 Gene3D AP2/ERF domain 128 184 IPR036955 GO:0003700|GO:0006355
Acco11g0374 392 MobiDBLite consensus disorder prediction 226 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0374 Acco-ChrAcco11 5360736 5361914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0374 8 391 AP2-EREBP Transcription Factor Family AT1G68550 33.501 8.97e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco11g0374 AP2 1.4e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g0374 11 5360736 5361914 Acco11g0374 11 5360736 5361914 ECH