Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0351 ATGGCTTTCTTCAATAATGATTTCTCCTCAGATCAAAACCTTAATCTCCCTCTCCTCCACACCAACAATATTAATCCACAGCCTCTTCACTCTTCAGTCTCTCCTAATTACTATGTTCATCAACATTCACAAACCTTTCTGGATTCTTCTATACCTTCTTCTGCTGATGAAAACAACAAGGTAAGCCTTGAAGTTGAAGAAGAGAAAACAAAGGACGTCATCCATGTAAGAGCCAAAAGAGGTCAAGCATCTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGAGAAAATCAACGAGAAGCTGCGATGTTTGCAAGAACTAGTTCCAGGGTGCTACAAGACGATGGGTATGGCAGTAATGTTAGATGTGATCATAGATTATATTCAATCTCTGCAACAACAGATTGAGTTTCTTTCGATGAAGCTTACAGCAGCAACCATGCATTATGATTTTCACACTTCTGAGTTCATCAATAACGTCCCCGAAACCTTCCAGAGGATCAATACGAGTACTTGGGAAGTCCAAGAGATGATGGAGAAGATGGGAGAGGAAGGTTATTTCAATCCAACGTGGCCTCCACATTAA 588 0.4082 MAFFNNDFSSDQNLNLPLLHTNNINPQPLHSSVSPNYYVHQHSQTFLDSSIPSSADENNKVSLEVEEEKTKDVIHVRAKRGQASDSHSLAERVRREKINEKLRCLQELVPGCYKTMGMAVMLDVIIDYIQSLQQQIEFLSMKLTAATMHYDFHTSEFINNVPETFQRINTSTWEVQEMMEKMGEEGYFNPTWPPH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0351 195 SMART finulus 88 138 IPR011598 GO:0046983
Acco11g0351 195 Gene3D - 77 141 IPR036638 GO:0046983
Acco11g0351 195 Pfam Helix-loop-helix DNA-binding domain 86 133 IPR011598 GO:0046983
Acco11g0351 195 CDD bHLH_AtBPE_like 72 153 - -
Acco11g0351 195 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 55 160 IPR024097 GO:0006355
Acco11g0351 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 151 IPR036638 GO:0046983
Acco11g0351 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 132 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0351 Acco-ChrAcco11 4894784 4895884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0351 66 154 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 78.652 1.08e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco11g0351 HLH 2.2e-06 No_clan