Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0307 ATGCATACATCAAAGTTGAGTCAAAAGGAGATTTTTCTTCTTATTTCTATTGCAGATTTTATGCACATGTGTGTTGAAGACGGTTTGTTTTTCGTTTTCTGACCGGCTTCACTCTCTCTTCTTGACTCGCAAGTTGAATCTTGTATAGCGAAAATGCATAATAAGGACGGTTGCTCTTCTCCAAATGGCGGAGCCGGAACAAGCATCGCTCCTTCTGGTGAAATGCAGTCTAATGGCGCCATTTATAGTGCCATCTACTCCACTCTGTTTTCTGACCAGCCATCCCTGTCTGCGAAAGACAATGTCGATCTCTCGCTTCACTCGTACGAAGGAAACGGTCCCTTGAAGTACAGTGACTCGATGATTCAGAGTCCCTTGTACGACTCCTGTGCCGTGCAGAACCATCAAGATATGGTGAACCGCCATAGCATGTGGCTAAATCGCATGGCCGAAACCTCAAAGGAGATCGAGGCTCTGCGGCAGGAGAACAGCCAACTTCGGGCTGCGAACATGGAGCTGAACAACCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAATTGGATGGGTCCTCGGGTCAAACAGAAGCGTTTGACGTTATAAATGGGTTTCGTGGCTTACGAATTGAGGACAATTTCGGGGACGGGAAAGAAAACTGTGAGAATTGGAATAAGGATCAAGAGGCTTTGAACGAGAGCCCAACAAGCGTGATTGAGAACACTGTCGAAGCGGAAAGGTTCTCGCTGCCCAAGAGTATATCTGTGAGGTCAAATGGGTACTTGAAGGTTGCTCAGGCTGTAACAGGTGGTGCCAGCAATGGAAGTCGCACCAAGGTCGCTACTAGGCCGCGCACATCTTTGACTCCAACTGAAGTCGTTCAAAAGGTGTATGTACGTGGAGGGAAAAAGGAGGAAGAGCCTCTGGAAATGGTGGTGTATAACCAAGGCATGTTCAAGACGGAGCTCTGCAACAAATGGCAGGAGACAGGGACATGCCCCTACAAGGATCAGTGCCAATTCGCTCATGGTATTGGTGAACTCCGCCCAGTCATACGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGTGTTGTGTGCCCATATGGCCACAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCATAGCACAGCCTAAGCCCAGCAGGCCAATGAACCTGCACAGATAA 1212 0.4876 MHTSKLSQKEIFLLISIADFMHMCVEDGLFFVFXPASLSLLDSQVESCIAKMHNKDGCSSPNGGAGTSIAPSGEMQSNGAIYSAIYSTLFSDQPSLSAKDNVDLSLHSYEGNGPLKYSDSMIQSPLYDSCAVQNHQDMVNRHSMWLNRMAETSKEIEALRQENSQLRAANMELNNQLSLLIQVSVQNQLDGSSGQTEAFDVINGFRGLRIEDNFGDGKENCENWNKDQEALNESPTSVIENTVEAERFSLPKSISVRSNGYLKVAQAVTGGASNGSRTKVATRPRTSLTPTEVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPKPSRPMNLHR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0307 403 Coils Coil 142 176 - -
Acco11g0307 403 ProSiteProfiles Zinc finger C3H1-type profile. 318 346 IPR000571 GO:0046872
Acco11g0307 403 FunFam Zinc finger protein 36, C3H1 type-like 1 352 388 - -
Acco11g0307 403 SUPERFAMILY CCCH zinc finger 352 386 IPR036855 GO:0046872
Acco11g0307 403 PANTHER CCCH ZINC FINGER/TIS11-RELATED 135 391 IPR045877 GO:0003729
Acco11g0307 403 SUPERFAMILY CCCH zinc finger 315 350 IPR036855 GO:0046872
Acco11g0307 403 Gene3D - 352 388 - -
Acco11g0307 403 Gene3D - 313 351 - -
Acco11g0307 403 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 319 344 IPR000571 GO:0046872
Acco11g0307 403 SMART c3hfinal6 318 345 IPR000571 GO:0046872
Acco11g0307 403 SMART c3hfinal6 356 383 IPR000571 GO:0046872
Acco11g0307 403 ProSiteProfiles Zinc finger C3H1-type profile. 356 384 IPR000571 GO:0046872
Acco11g0307 403 FunFam zinc finger CCCH domain-containing protein 15-like 312 351 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0307 117 396 C3H Transcription Factor Family AT1G68200 53.082 5.29e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco11g0307 zf-CCCH 5.6e-10 CL0537