Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0295 ATGGATTCCGATTCAGACTCAGATGGTTCTCATGTTTCTAATACGCCCCCCAGGGAAGAGCCTCGACCATCCTTGACGGCACAACCGCCACCACCGCGGCCTAAACCTGTTCTCGTTTCCAACAAATTGAAACTGTGTTCCACGTCCAGTGAGAAATCTTCAAAATCCAAATTACGCCCTTCTAGACCAGCAAAACCGTCATCCAAACAGGAACCTACTCAAGAAGAATTTCCCTGTAACTCCTTTTGCCTCCCTACTCTGCCCTTCCAAATTCGTCGACCTTCTGACTGTGTCACTCAACTGTCAACTGCACAGTCCTTTGAAATCCTCCCAGCTGGGTATTTCTCCAAATCTGCGTCTTTCTCAAAAATTCGAAGGCCTTTTCTCAGTTTTACAGAGTCATCTGAAAATGGACCTCCTCTTGATTTTGTATCTAACCCAGGCCTCAAGAACGAGAGTAATGAGAGTTCTTGTCACTTGGGTGATTCTATTCCAGTTGAAGTAGAGGGCGAAAGTCTAAGAGCAACGAATGTGTCAAAATTAGGAAAGAGACATCCTAATCTGATAGGAGCTAGTGTGCCGGTGCCATCTGTTAAGGTTAGAAAATGTGGTGGTGAGGGAAATTTTGTGAGGTTGAACCTGAATAGCAAGAAGTGGAAGTTGCGGAACCATGGAAAAAAGAAAAATTTTGCATATGGTAAGCGTAGAAGTTACAGGAGAGATAAAGTTAAATCGAAGCGTGAAGATCAGGATCAAGTGAAGTCGTTCATAGAGTCTGAGGGGGATGCATTTGTTGCGCAGACCGCACAAAAGAAATCCAGGGATTCTCGTGGTGCAAAAGAATGTGATTGTAAAGTGATTGAAGAGGTGGTTTCAGTTGTTCGAGAAGACCCATCTGATGAGAATCTGGTGAAGTTGCTACAGTTAGTTTATGGCTATGATTATTTTCGGGATGGTCAATTGGAGGCAGTCAAGATGGTACTTGCTGGAAAGTCGACTATGCTTATTTTGCCCACTGGTGCAGGAAAGTCCCTGTGTTATCAGTTACCTGCAATGATTTTACCTGGAATTACCCTGGTCGTCAGTCCACTGGTAGCCTTGATGATTGATCAACATAGAAAATTGCCTCCTATGATTAATGGAGGACTTCTATGCAGCAGTCAGGCACCTGAAGAAGCCTCTGAAACGCTGAAGCATCTTCAAGAAGGTGTATTAAAGGTGCTTTTTGTTTCACCAGAGAGGTTACTGAATGAAGAATTTTTGTCAGTAGTTTCCACTGCTTCAACTGTATCTCTTGTTGTTGTTGACGAAGCCCATTGTATATCTGAATGGTCACACAATTTTCGCCCTTCATTCATGAGGCTTAGGGCATCTTTTCTCCACAACAAGCTCAATGCAGGTTCTTTTCTGGCAATGACAGCAACTGCTACAACCACAACTTTAAATTCTGTCATGTCTGCTTTGGACATTCCTTGCACAAATCTCATCCAGAAGACACAGTTGACAGACAATTTACATTTATCAGTCTCGTTAGCTAGAAATAGAATGAAAGACTTGTTGGCGCTAATCAAGTCTCCTCCATATGTGGAAGCTCAAAGCATTATCATATACTGCAAATTTCAGTCTGAAGCTGCTATAATTAGCAAATACTTGAGTGACAACAATATCTCTGCAAAGAGCTATCATAGCAGTATTCCCGCAAAGGAGCGTAGCTATGTACAGGAGTTGTTTGGTTCCAACAAGATCAGAGTGATTGTTGCAACTGTTGCATTTGGCATGGGATTAGACAAAAGGGATGTTGGAGCCGTAATTCATTACAGTCTGCCAGAAAGTCCTGAGCATTACGTTCAGGAGATTGGACGGGCTGGAAGGGATGGGAGGTTGTCCTTTTGCCACCTATTTTATGATGATGAAACATATTTCAAACTCCGTAGTCTAATGTATAGTGATGGAGTAGATGAATATGCAGTGAACAAGTTTCTCTGTGAAGTATTTCCTGCTCACAGGATTTCCCCCGGCCAAATATGTTCCTTGATCAAAGAATCTGCTTCACGGAGGTTTGACATGAAGGAAGAGGTGATGCTGACGCTTTTGACCCGCTTGGAGCTGGGTGATGTGCAGTACCTACATTTACTTCCACAGATAAATACCACTTGCACTTTGAGTTTTCACAAGACTCCCCCTCCATTACTTGCCCAAAAGGACTCTGCTGTTGCTGCGATACTGAAAAGGTCTGAAAATAAGCAAGGGCTATATGTTTTTGACATGCCCTCTGTGGCTAATGACATGGGAGTTGCAGTGGTTGAAATATCAAATCATTTGCACAATCTAAAGTTGCTTGGAGAAGTAACCCTTGAGATGAAGGACTCGGCCTATTGCTATACAATTGTTAAAGCACCAACAGATTTTTTTGTGTTGTCAGAAAATCTGACACGATGGTTATATGAGTTTGAAAGATCAAAGGTACGGAAACTGGATGCAATGTACAATGCGGCATATCATGCAGCAAATATTTGTGATAAGACGCCAGGTTGCAGTGGTTCCAATCACACACCATGCTTGCAAAGTAAAATATTAGATTACTTTGCAGGGGTCGATAATAATTCCTTGTCCAAGAAGTTGGATCAAAGCAGTCCTTTTTTGCGGGCAGATATAAAGGTCTTTCTACAGAGCAATTTACAGGCGAAATTCACACCAAGAGCCATTGCAAGGATAATGCACGGCATTGCAAGCCCAGCCTATCCTTCTGCTGTTTGGTCTAAAACTCATTTCTGGGGAAGGTATAGTCATGTAGACTTTCAGGTGGTGATGGAAGCAGCAAAGGAAGAACTTCAGAATTTTGTTGGGAAAGACAGCTCTAGCCATCCAAGATAA 2874 0.4262 MDSDSDSDGSHVSNTPPREEPRPSLTAQPPPPRPKPVLVSNKLKLCSTSSEKSSKSKLRPSRPAKPSSKQEPTQEEFPCNSFCLPTLPFQIRRPSDCVTQLSTAQSFEILPAGYFSKSASFSKIRRPFLSFTESSENGPPLDFVSNPGLKNESNESSCHLGDSIPVEVEGESLRATNVSKLGKRHPNLIGASVPVPSVKVRKCGGEGNFVRLNLNSKKWKLRNHGKKKNFAYGKRRSYRRDKVKSKREDQDQVKSFIESEGDAFVAQTAQKKSRDSRGAKECDCKVIEEVVSVVREDPSDENLVKLLQLVYGYDYFRDGQLEAVKMVLAGKSTMLILPTGAGKSLCYQLPAMILPGITLVVSPLVALMIDQHRKLPPMINGGLLCSSQAPEEASETLKHLQEGVLKVLFVSPERLLNEEFLSVVSTASTVSLVVVDEAHCISEWSHNFRPSFMRLRASFLHNKLNAGSFLAMTATATTTTLNSVMSALDIPCTNLIQKTQLTDNLHLSVSLARNRMKDLLALIKSPPYVEAQSIIIYCKFQSEAAIISKYLSDNNISAKSYHSSIPAKERSYVQELFGSNKIRVIVATVAFGMGLDKRDVGAVIHYSLPESPEHYVQEIGRAGRDGRLSFCHLFYDDETYFKLRSLMYSDGVDEYAVNKFLCEVFPAHRISPGQICSLIKESASRRFDMKEEVMLTLLTRLELGDVQYLHLLPQINTTCTLSFHKTPPPLLAQKDSAVAAILKRSENKQGLYVFDMPSVANDMGVAVVEISNHLHNLKLLGEVTLEMKDSAYCYTIVKAPTDFFVLSENLTRWLYEFERSKVRKLDAMYNAAYHAANICDKTPGCSGSNHTPCLQSKILDYFAGVDNNSLSKKLDQSSPFLRADIKVFLQSNLQAKFTPRAIARIMHGIASPAYPSAVWSKTHFWGRYSHVDFQVVMEAAKEELQNFVGKDSSSHPR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0295 957 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 494 IPR014001 -
Acco11g0295 957 FunFam ATP-dependent DNA helicase Q-like 5 502 693 - -
Acco11g0295 957 SMART ultradead3 312 508 IPR014001 -
Acco11g0295 957 Pfam Helicase conserved C-terminal domain 520 625 IPR001650 -
Acco11g0295 957 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 673 IPR001650 -
Acco11g0295 957 Gene3D - 503 691 IPR027417 -
Acco11g0295 957 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 431 440 IPR002464 -
Acco11g0295 957 NCBIfam RecQ family ATP-dependent DNA helicase 306 650 IPR004589 GO:0004386|GO:0006310
Acco11g0295 957 Gene3D - 287 493 IPR027417 -
Acco11g0295 957 CDD SF2_C_RecQ 503 635 - -
Acco11g0295 957 SMART helicmild6 545 626 IPR001650 -
Acco11g0295 957 MobiDBLite consensus disorder prediction 22 37 - -
Acco11g0295 957 MobiDBLite consensus disorder prediction 1 77 - -
Acco11g0295 957 CDD DEXHc_RecQ4-like 304 497 - -
Acco11g0295 957 MobiDBLite consensus disorder prediction 42 77 - -
Acco11g0295 957 Pfam DEAD/DEAH box helicase 318 480 IPR011545 GO:0003676|GO:0005524
Acco11g0295 957 PANTHER DNA HELICASE RECQ FAMILY MEMBER 294 820 - -
Acco11g0295 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 644 IPR027417 -
Acco11g0295 957 FunFam ATP-dependent DNA helicase Q4 284 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0295 Acco-ChrAcco11 4162498 4169730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0295 311 658 Eukaryotic Initiation Factors Gene Family AT3G19760 23.562 1.42e-14 75.1