LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco11g0242	ATGCCATTCAGAGATTTTGTTCGTGAGCTCAGGGGAATTCGAGATGCTTTGGGTAATATATCTGGAAGAGGGATAGATGCCAAGCGTAATTATTGCCGTGGAAAATCTCTTATTGCACCTGAATTGTCATCACCGGCATCTTCATCTTTGTTAGTGACTGAGCAGAGCCGCTGGGCTAACTTGCCACCTGAATTGTTATTAGACATAATTCAAAGGGTGGAAGAAAGCGAAACTTCCTGGCCTGCCCGGCGGGTGGTTGTAGCCTGTGCCTCAGTTTGTAGGTCATGGAGAAAAATAACAGAGCAGGTGGTAAAGACACCAGAACAGTGTGGCTGGCTTACCTTTCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCTATACAGTGTTTTATAAAGAGAGAAAGGGCGACTTCAAAATATCGTTTATATCTTGGATTGAGCCCAGCTCTCTCTGGGGATATGAGCAAACTACTACTGGCAGCAAAGAAGATTAGACGGACAACATGTACAGAATTTTTGATATCCTTGGTCGCAGATGATTTTTCTAAAGCAAACAATACTTATGTTGGAAAGCTGAGGTCTAATTTTCTTGGCACCAAGTTCATGATTTTGGATTGTCAGCTTCCGCTAGACTCTTCCCTTCCATTGAATGGTAAATTGCAGCCAAGAATCCATTCAAAGCAGGTTCTTCCAAAGGCTGCTTCTGCTGCAAAGAATGCTGTGGTCACCGTATCTTATGAGCTCAATGTTCTCCGCACGAGAGGTCCAAGGAGAATGCGGTGTACGATGCATTCAATTCCCATATCTGCCATCCAAGAAGGGGGCAATTCTCCTACTCCTTTGAAGTTTACTTATGGCCTTGATGAGAATTTATCTACCTCCCACTCATCAAAAGGGGAAAAGCCAGGAGTTGATTATGACTCAAACAGTGACGACAAGCCCCAAGAACCGAACCACAATTCAGGGGAGCCGCTGGTTTTGAAAAATAAAGCGCCTAGATGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTCAAGGGCCGTGTTACAGTAGCCTCTGTGAAGAACTTCCAGCTTGTGGCAGCTGCAGAACCTCAACAAAATGTTTCAGCCATAGAGCAAGATAGAGTGATATTGCAATTTGGGAAGATTGGAAAGGACATTTTCACCATGGACTACCGCTACCCCCTCTCTGCGTTTCAAGCTTTTGCAATCTGCTTGAGCAGTTTTGACACGAAACCTGCTTGCGAGTGA	1260	0.45	MPFRDFVRELRGIRDALGNISGRGIDAKRNYCRGKSLIAPELSSPASSSLLVTEQSRWANLPPELLLDIIQRVEESETSWPARRVVVACASVCRSWRKITEQVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERATSKYRLYLGLSPALSGDMSKLLLAAKKIRRTTCTEFLISLVADDFSKANNTYVGKLRSNFLGTKFMILDCQLPLDSSLPLNGKLQPRIHSKQVLPKAASAAKNAVVTVSYELNVLRTRGPRRMRCTMHSIPISAIQEGGNSPTPLKFTYGLDENLSTSHSSKGEKPGVDYDSNSDDKPQEPNHNSGEPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPQQNVSAIEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE	419

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco11g0242	419	CDD	F-box_AtTLP-like	58	102	-	-
	Acco11g0242	419	ProSitePatterns	Tub family signature 2.	404	419	IPR018066	-
	Acco11g0242	419	Gene3D	-	53	106	-	-
	Acco11g0242	419	SUPERFAMILY	Tubby C-terminal domain-like	107	419	IPR025659	-
	Acco11g0242	419	Pfam	F-box domain	58	101	IPR001810	GO:0005515
	Acco11g0242	419	MobiDBLite	consensus disorder prediction	302	320	-	-
	Acco11g0242	419	MobiDBLite	consensus disorder prediction	294	328	-	-
	Acco11g0242	419	Gene3D	Tubby Protein; Chain A	116	419	IPR025659	-
	Acco11g0242	419	Pfam	Tub family	119	414	IPR000007	-
	Acco11g0242	419	SUPERFAMILY	F-box domain	55	122	IPR036047	GO:0005515
	Acco11g0242	419	PRINTS	Tubby superfamily signature	376	395	IPR000007	-
	Acco11g0242	419	PRINTS	Tubby superfamily signature	174	190	IPR000007	-
	Acco11g0242	419	PRINTS	Tubby superfamily signature	397	419	IPR000007	-
	Acco11g0242	419	PRINTS	Tubby superfamily signature	347	363	IPR000007	-
	Acco11g0242	419	PRINTS	Tubby superfamily signature	190	214	IPR000007	-
	Acco11g0242	419	PRINTS	Tubby superfamily signature	329	346	IPR000007	-
	Acco11g0242	419	PRINTS	Tubby superfamily signature	240	267	IPR000007	-
	Acco11g0242	419	PANTHER	TUBBY-RELATED	48	417	-	-
	Acco11g0242	419	ProSitePatterns	Tub family signature 1.	347	360	IPR018066	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco11g0242	Acco-ChrAcco11	3642742	3644716	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco11g0242	33	419	TUB Transcription Factor Family	AT1G47270	63.198	8.01e-164	464

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Acco11g0242		Tub	3.6e-102	CL0395