Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0217 ATGAGGAAGCCTTGCTGTGATAAGCAAGACATGAACAAAGGAGCTTGGTCTAAACAAGAAGACCAAAAACTTATTGATTATATCAACAAACATGGCGAAGGTTGCTGGCGTACTCTTCCTCAAGATGCAGGATTACTTCGCTGCGGCAAAAGTTGCAGGCTGAGATGGATAAATTATCTAAGGCCAGACCTTAAAAGAGGGAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAACTTCATGCCCTGCTTGGCAATAGGTGGTCTCTGATAGCTGGAAGATTACCAGGAAGGACAGACAATGAAGTAAAAAATTATTGGAACTCTCATCTAAGAAGAAAGCTCATCAACATGGGAATAGATCCAAATAATCACAAACTCACTCCCAAATTCCCTTCTCTTTCTCATCATCATCAAAATCAAACAACTTCTGGTAGCTCAGCTTCATCAGGATTGAAGAAGAAGAAACACAAAGACAATCTCAACAACAACAATAGTGTTGAGCCAATAACAAAGAAGCCTAAAACTACTACTGGTAGTGCTGGTAATTATGAACAAGTTTCAGATGCTGCAAGTGGCTTAGAAGTTGAGTCCTCTGGCTTATTGCCTGATCTAAACCTTGATCTCTCAATCAACATTATTCCTTCTTCAACCATATTTCACACTAGTTCTGCTTATGATCATGAAGACAATAATCAAAAGCCAATGATTCATCAACATGAATCTAAGTCACCAAGGACTATGCAGTTAGCTTCCTCTCCAACCCTACTTTTGTTTCAGTGA 783 0.3921 MRKPCCDKQDMNKGAWSKQEDQKLIDYINKHGEGCWRTLPQDAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGIDPNNHKLTPKFPSLSHHHQNQTTSGSSASSGLKKKKHKDNLNNNNSVEPITKKPKTTTGSAGNYEQVSDAASGLEVESSGLLPDLNLDLSINIIPSSTIFHTSSAYDHEDNNQKPMIHQHESKSPRTMQLASSPTLLLFQ 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0217 260 MobiDBLite consensus disorder prediction 237 260 - -
Acco11g0217 260 FunFam MYB-related transcription factor 12 65 - -
Acco11g0217 260 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Acco11g0217 260 FunFam MYB transcription factor 67 128 - -
Acco11g0217 260 MobiDBLite consensus disorder prediction 163 183 - -
Acco11g0217 260 CDD SANT 68 111 IPR001005 -
Acco11g0217 260 SMART sant 12 62 IPR001005 -
Acco11g0217 260 SMART sant 65 113 IPR001005 -
Acco11g0217 260 CDD SANT 15 60 IPR001005 -
Acco11g0217 260 MobiDBLite consensus disorder prediction 122 183 - -
Acco11g0217 260 Gene3D - 13 65 - -
Acco11g0217 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Acco11g0217 260 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Acco11g0217 260 MobiDBLite consensus disorder prediction 242 260 - -
Acco11g0217 260 MobiDBLite consensus disorder prediction 128 150 - -
Acco11g0217 260 Gene3D - 68 115 - -
Acco11g0217 260 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Acco11g0217 260 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Acco11g0217 260 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Acco11g0217 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Acco11g0217 260 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0217 Acco-ChrAcco11 2828030 2829746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0217 2 213 MYB Transcription Factor Family AT4G38620 53.182 1.67e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco11g0217 Myb_DNA-binding 2.4e-14 CL0123