Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0216 ATGGCCGGCGGAGAAGCCGGCGACGAGGACCGTACGCTGGAAATCCTAGGCCTTGTTCATGACATCGCTGCAATGTATGGCGGGGCAACTTGTGGTTCTTCCTCCTCCGCCATTGCCGCCGATACTGTGTTCAAGAAGGACTGCATCGATCTGGTTCGTCGGATCTCACATCTCTCCCATTTGTTCGAGGAGATTAGGGATTTAAATGCTGTTAATTCTGCTGAGTTGGATGCTTCCACTTCTTCCAATTGCTCTGCCTCTTCCTGGTCCTCTGATCTGATGTTTGCTCTTCAATCTGCTAAGCGCCTTCTCTCCGTCGCTAGTAACTTTCATTTCGATTGCACTTCTGATGAAGATGCAAAGACTGTTGTCTTCCAATTTCAACGTGTGACATGGAAATTAGAGCAACTTTTAAGCAGATTACCGTATGACCATTTGGACATATCAGAGGAAGTTAGAGAACAGGTGGAGTTGGTAAGGACACAATTGAGTCGAGCCACTGATAGATATGGATTTCTGATCTCAAATATGTCACCTTGTGACATATCCCAGCAACTGGCTGAAAACGTTAGTCAGATTAATGGTAAATCTAGGAATCAGTTGCGTAAGCAAAACAGCTGTCCTGAGTATTTACTAAAACTGGACAACATTCCTAAAAGCAATGTAGAGAAAAGATGCAGCACATGCCAGACCAGTCTTCACTTGGAAAGGACAAGGAGCATCCCTGTCTCTTCAGAGGCTTCCTTATCAAATGTGATTCATTCGGAAAGTCAAGAAGCGTCCAAGAAGAGCCTAGCCAGAGTTGAAACACATCAAACTGTTGTAATTCCTGAAGATTTTCTTTGCCCTATATCATTGGAATTAATGAGCGATCCTGTTATTGTGGCCACTGGCCAGACGTATGAGCGGTCTTACATACAGAGATGGATAGCATGTGGAAATAAAACTTGTCCAAAAACTCGCCAGAAGTTGGAAAATTTGAACCTAACCCCAAATTATGTCTTAAGGAGCCTTATCAATCAGTGGTGCATAGACAACAATTTTGAGCATCCAAGAGGACTAAGCCATGGCAAGCTAAAACAAAGTGATGGATCATTTAGAGATGTTACTGGTGACATGGCAACCATTGAGGCTCTGGTATTGAAGCTCTCAAGCCATTCCAGTGAGGACTGTAGAGCAGCAGTCTCTGAAATCCGATCACTTTCAAGACGGAGCACAGACAATAGAATACTAATTGCCGAAGCTGGAGCGATTCCAGTTCTGGTCAACTTATTAACATCAGAAGATGTACTGACACAAGAGAATGCAGTGACTTCAATTCTCAACCTCTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCAGGTGCCATCCCATCAATTGTGCAAGTTCTTAGAGTTGGAAGCATGGAAGCGAGAGAAAATGCTGCAGCAACCCTTTTTAGCTTATCGTTTCCAGATGAGAACAAAATAATAATTGGTTCCTCAGGAGCTTTGCCTCTTTTGATAGAATTGCTCCAAAATGGCAGCCCTAGAGGGAAGAAGGATGCAGCATCAGCATTATTCTACTTATGCATTAATGAAGGGAACAAGGGTAAGGCCATTAGATCAGGGATCATCCCCGCATTGTTGAAGAAGCTTACAGATTCAAGAAAATCAATGGTTGATGAAGCCCTGACAATAATGTCAGTTCTTGTCAGCCACCATGGGGCAAAGGCTGCTATTGTAAATGCTGGTACTATGCCTGTCTTGATCGATCTTTTGAGTGCAGGTCTGCCTCGACAGAAAGAGAATGCAGCCTCCATTTTATTTTCTTTGTGTAAGAGAGATGCTAATAATCTTGCTTGTTTAAGTACTCTTGGTGGTGTCAAGCCATTGACTGAACTTACTCTCGGTGGCACTGAGAGAGCTAAACGGAAGGCGACTTCCTTGTTGGAATTCATTCGCAAATCCCAGGAGCTTTGA 1968 0.435 MAGGEAGDEDRTLEILGLVHDIAAMYGGATCGSSSSAIAADTVFKKDCIDLVRRISHLSHLFEEIRDLNAVNSAELDASTSSNCSASSWSSDLMFALQSAKRLLSVASNFHFDCTSDEDAKTVVFQFQRVTWKLEQLLSRLPYDHLDISEEVREQVELVRTQLSRATDRYGFLISNMSPCDISQQLAENVSQINGKSRNQLRKQNSCPEYLLKLDNIPKSNVEKRCSTCQTSLHLERTRSIPVSSEASLSNVIHSESQEASKKSLARVETHQTVVIPEDFLCPISLELMSDPVIVATGQTYERSYIQRWIACGNKTCPKTRQKLENLNLTPNYVLRSLINQWCIDNNFEHPRGLSHGKLKQSDGSFRDVTGDMATIEALVLKLSSHSSEDCRAAVSEIRSLSRRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRVGSMEARENAAATLFSLSFPDENKIIIGSSGALPLLIELLQNGSPRGKKDAASALFYLCINEGNKGKAIRSGIIPALLKKLTDSRKSMVDEALTIMSVLVSHHGAKAAIVNAGTMPVLIDLLSAGLPRQKENAASILFSLCKRDANNLACLSTLGGVKPLTELTLGGTERAKRKATSLLEFIRKSQEL 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0216 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 457 499 IPR000225 GO:0005515
Acco11g0216 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Acco11g0216 655 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
Acco11g0216 655 Coils Coil 149 169 - -
Acco11g0216 655 SUPERFAMILY ARM repeat 375 649 IPR016024 -
Acco11g0216 655 SUPERFAMILY RING/U-box 274 350 - -
Acco11g0216 655 PANTHER U BOX DOMAIN-CONTAINING 45 648 - -
Acco11g0216 655 Gene3D - 570 649 IPR011989 -
Acco11g0216 655 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Acco11g0216 655 Pfam Armadillo/beta-catenin-like repeat 488 526 IPR000225 GO:0005515
Acco11g0216 655 Pfam Armadillo/beta-catenin-like repeat 406 444 IPR000225 GO:0005515
Acco11g0216 655 FunFam RING-type E3 ubiquitin transferase 361 655 - -
Acco11g0216 655 FunFam RING-type E3 ubiquitin transferase 276 347 - -
Acco11g0216 655 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Acco11g0216 655 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Acco11g0216 655 Gene3D - 355 569 IPR011989 -
Acco11g0216 655 SMART arm_5 446 486 IPR000225 GO:0005515
Acco11g0216 655 SMART arm_5 569 609 IPR000225 GO:0005515
Acco11g0216 655 SMART arm_5 405 445 IPR000225 GO:0005515
Acco11g0216 655 SMART arm_5 528 568 IPR000225 GO:0005515
Acco11g0216 655 SMART arm_5 487 527 IPR000225 GO:0005515
Acco11g0216 655 CDD RING-Ubox_PUB 277 329 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0216 Acco-ChrAcco11 2806816 2809884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0216 25 652 U-box Gene Family AT1G23030 55.247 0.0 649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g0216 11 2806816 2809884 Acco11g0216 11 2806816 2809884 ECH