Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0121 ATGCTGATATGCCTGTTTCTCTCCCTCTGGCCTCAAGTTCTCCTCTCTCTCCTCTCTCGTTTCACCGGGGATTCTCCTCCGTTTCTCGGGCGTCCGACCCACCCTATTTTTCCTAATTTGTGTTTTCTTTCTTTCTTTCTTTCTGTTGAAATGGCAGAAACTTGCGGAAGCTGTAGCTCTTGGGTCGATGACATTTACTGGACCCATTTCAAATTCACTCATTTTGCTCAGCGTCTTCCTCCTGGTTTTGATCAACACCTTGCACTTCCCAAAAGATTTTCGGATAGCCTGAAAAGAAAATTCCCAGATAATGTGACCCTTAAAGGTCCTGGTGGCGCTGAGTTGACTGTCAAATTGTCAACTAAAGATGATATCTTGCACTTCACAAATGGTTGGCAACAATTTGCGCAAGATCACTTTTTGGAAGAGAACGATCTCCTGATCTTCAAGTACAATGGTGAATCACAGTTTGATGTGCTAATATTTGACAACAAGAACTTATGTGAGAAGGTGGCTTCTTATTTTGTTCGGGACAGTGGGCAAACAAATCAGAGAAACACAGATAATAACGGTTTGGGAGAAGAAAATATCCCTACTGATATCGATGTCAAAGAGGCTTCGCCTAAGAAATCTGCACGCGGTAAGAGTAAAAAGACAAGTAAAAAGGCTCGTAAAGCTACTGTGGAATTCACCCCTTCCCAGCCAACTAAGCGGAGAGGAAGATCTAAGGGATCTGATGCCCATGCTGGAGGAATTGAATGGGTTCCTGATGCTGATACTGCATCCCCCGGCGGAAATAAGATAATCGAAATAGTGGATGCTTCAAACCCAAAGGCTATCATAGAGAATGCAAAAAAGAATACCCTCCAATTGGCTCAAGCAGCATGTCCCACAGACGGATTCTATGTAGTCATGCGACCCTCGCATGTATTCCGGAGATTCTATTTGACAATCCCTATGAAGTGGATGACAGAGCATTTTCCTCTACAATCTGAAGATTTGATATTACGTGTGGGAGAGATCGAATGGCTTGCTAAATACATCTATGAAGCCAGCCGTTGTACCGGCGGACTGACCGGCGGGTGGAAACAGTTTGTGATGGACAATAACCTGCGAGAATTTGATGTTTGTGTGTTCAACCAAGCAAATATAGGCAAGAAGCCACTGACCCTTGATGTGAAAATATTCAAAGTTGATGTGTAG 1203 0.4364 MLICLFLSLWPQVLLSLLSRFTGDSPPFLGRPTHPIFPNLCFLSFFLSVEMAETCGSCSSWVDDIYWTHFKFTHFAQRLPPGFDQHLALPKRFSDSLKRKFPDNVTLKGPGGAELTVKLSTKDDILHFTNGWQQFAQDHFLEENDLLIFKYNGESQFDVLIFDNKNLCEKVASYFVRDSGQTNQRNTDNNGLGEENIPTDIDVKEASPKKSARGKSKKTSKKARKATVEFTPSQPTKRRGRSKGSDAHAGGIEWVPDADTASPGGNKIIEIVDASNPKAIIENAKKNTLQLAQAACPTDGFYVVMRPSHVFRRFYLTIPMKWMTEHFPLQSEDLILRVGEIEWLAKYIYEASRCTGGLTGGWKQFVMDNNLREFDVCVFNQANIGKKPLTLDVKIFKVDV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0121 400 MobiDBLite consensus disorder prediction 198 212 - -
Acco11g0121 400 ProSiteProfiles B3 DNA-binding domain profile. 72 165 IPR003340 GO:0003677
Acco11g0121 400 SUPERFAMILY DNA-binding pseudobarrel domain 71 165 IPR015300 -
Acco11g0121 400 Gene3D - 280 399 IPR015300 -
Acco11g0121 400 Pfam B3 DNA binding domain 301 397 IPR003340 GO:0003677
Acco11g0121 400 Pfam B3 DNA binding domain 86 164 IPR003340 GO:0003677
Acco11g0121 400 MobiDBLite consensus disorder prediction 180 257 - -
Acco11g0121 400 MobiDBLite consensus disorder prediction 180 194 - -
Acco11g0121 400 SUPERFAMILY DNA-binding pseudobarrel domain 301 389 IPR015300 -
Acco11g0121 400 SMART B3_2 301 399 IPR003340 GO:0003677
Acco11g0121 400 SMART B3_2 75 165 IPR003340 GO:0003677
Acco11g0121 400 ProSiteProfiles B3 DNA-binding domain profile. 301 399 IPR003340 GO:0003677
Acco11g0121 400 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 83 399 IPR044837 -
Acco11g0121 400 CDD B3_DNA 301 397 IPR003340 GO:0003677
Acco11g0121 400 Gene3D - 68 168 IPR015300 -
Acco11g0121 400 CDD B3_DNA 82 163 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0121 Acco-ChrAcco11 1321604 1325861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0121 278 397 REM Transcription Factor Family AT4G33280 42.500 1.42e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco11g0121 B3 1e-14 CL0405