Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0077 ATGTACTTGCCCAAGATCGAGCTATCGAGTATGGGTGCCCTAAACCACCAAAAAGAAAAAAGCCCAACATATACATACATACTTACTTCAGATTCGCTTGACTTTTCCCAAGAACACATCATGTCTGCGGCTTCCTCGTCTTCACCGTTCTTCGGAATCACAGAAGAAAACCCAATTCTTCAGATGACACAACAACAACAACATCAACATCAATCCTCTACAGCTGCTTCCTCGACTTCTCCAAACACACTTGTTCCTCAAAAGAAACGAAGGAATCAACCTGGAACACCAAATCCAGATGCGGAAGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTTCAAAGAGAGCAGAACCTGCAACTTCACAGAAGAGGACACAACCTACCATGGAAGCTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGTGTCCACCATGACCCTTCTAGAGCTCTCGGTGACCTCACCGGCATTAAGAAACACTACTCGAGAAAACACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCGAAGAAATACGCCGTTCAGTCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACCAGAGAATACAGATGTGACTGTGGCACACTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCCCTATCTCAAGAGAGTGCAAGAAACCCTACAAGCTTAAACCCTATGGCCACTCATAATCTTTATGGCACAAGCCATCATATGAGCTTAGGTCTCTCTCATCATCATCAACAACTTTCGGGTTCTTCACTTTCATCTCACCACCTTCATTTTAATCATCAAAACCCGAATACCACCAGTCTCTTGCGTCTAGGAGGAGCTGCCAATGCCAACAACAACAATAGTAATAATAATGCAGCAAAATTTGAGCCTACCAGCTTAATCTCACCCTCATCATCCTCAAACCCTAATTCAATGCCCAATCATTCCTCAGCTTTTTTCATGTCAGATCCAATCCCTAACCAAGGATTTCAGCATCATCAGCAAGCATTTTCTTCTGCCGGCAACAAGGCTTCGTCTTTGCATGGTCTCATGCAGCTTCCTGATCTTCAAGGAAACCCTAATGATAACGACAGTTCTTCCAACAATCCTTTCAATCTAGGGTTCTTCCCTAATAACACTATGATCACACCTGATCAGTTCAATAATCCTATGGGGTCTGGTTTAGCTTCGTCAGTGCTTTTCAGCAACTCAATGCAGCACGCAGACGAGGTTTCTCCAGCGGCGGCACATATGTCGGCAACTGCATTGCTTCAGAAGGCTGCTCAAATGGGCTCCACCACGACCACACCGCCGCCGAATAATAACAGTTCTTGCTCGTTACTCAGAAGAATGGGTGGTTCATCAGCCAATAATAATGGTGGTAGTGGTAAATCGGATAATCTTGTCGCTTTCGGAAGCGACAGTACGGAGAATGATCACCACTATCACCTTCGAGGGTTGATGAACTCTCTTGCTAACGGGAATGCTTCGATATTTGGGAATGTGCAAGGAGGGAATGAGCAGGGAAATAGTCTGCAACAGAATCTGGGAGTGGGATTCGGAGGTTCTGATAAGTTAACGTTAGACTTTTTAGGTGTCGGAGGAATGGTGAGGAACATGACTAGTGGTGGCTTTTCCTCGTCACAGAGAGAAGCTCAACAACAACATCAACATGGAAGCATCAATGTTATGAGTTCTTTGGAACCTCCGCCTGGACAGCATCAACAGCAGACAAACCAAAGTTTCAGAAGCACGACGTCATTGCAATGA 1857 0.4491 MYLPKIELSSMGALNHQKEKSPTYTYILTSDSLDFSQEHIMSAASSSSPFFGITEENPILQMTQQQQHQHQSSTAASSTSPNTLVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALSQESARNPTSLNPMATHNLYGTSHHMSLGLSHHHQQLSGSSLSSHHLHFNHQNPNTTSLLRLGGAANANNNNSNNNAAKFEPTSLISPSSSSNPNSMPNHSSAFFMSDPIPNQGFQHHQQAFSSAGNKASSLHGLMQLPDLQGNPNDNDSSSNNPFNLGFFPNNTMITPDQFNNPMGSGLASSVLFSNSMQHADEVSPAAAHMSATALLQKAAQMGSTTTTPPPNNNSSCSLLRRMGGSSANNNGGSGKSDNLVAFGSDSTENDHHYHLRGLMNSLANGNASIFGNVQGGNEQGNSLQQNLGVGFGGSDKLTLDFLGVGGMVRNMTSGGFSSSQREAQQQHQHGSINVMSSLEPPPGQHQQQTNQSFRSTTSLQ 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0077 618 MobiDBLite consensus disorder prediction 310 343 - -
Acco11g0077 618 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 63 580 IPR031140 -
Acco11g0077 618 Gene3D Classic Zinc Finger 171 250 - -
Acco11g0077 618 ProSitePatterns Zinc finger C2H2 type domain signature. 119 139 IPR013087 -
Acco11g0077 618 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 139 IPR013087 -
Acco11g0077 618 Gene3D Classic Zinc Finger 96 165 - -
Acco11g0077 618 MobiDBLite consensus disorder prediction 456 501 - -
Acco11g0077 618 FunFam protein indeterminate-domain 12-like 96 164 - -
Acco11g0077 618 MobiDBLite consensus disorder prediction 62 102 - -
Acco11g0077 618 Pfam Zinc-finger double-stranded RNA-binding 117 139 IPR022755 -
Acco11g0077 618 SMART c2h2final6 193 213 IPR013087 -
Acco11g0077 618 SMART c2h2final6 117 139 IPR013087 -
Acco11g0077 618 SMART c2h2final6 158 188 IPR013087 -
Acco11g0077 618 FunFam protein indeterminate-domain 5, chloroplastic-like 171 250 - -
Acco11g0077 618 MobiDBLite consensus disorder prediction 62 94 - -
Acco11g0077 618 SUPERFAMILY beta-beta-alpha zinc fingers 116 213 IPR036236 -
Acco11g0077 618 MobiDBLite consensus disorder prediction 571 618 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0077 Acco-ChrAcco11 917285 922471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0077 112 569 C2H2 Transcription Factor Family AT2G02080 51.805 6.24e-126 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco11g0077 zf-C2H2_jaz 3.8e-05 CL0361