Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0072 ATGGACCTTGATATGCGTCGCTGGATACTAGAGTTTCTCCTCACAAGTTCCGTTGTTCCAGATACAATCGCCAAGAAGGTATGCACTGTTTTGCCTCTCCCTGGTTTCGATTCGCGGCTCGGGAAAATATTGGCTCTCAAGTCTATTGAATCGGAGGTGGCTAATGCGTTGTTTACAGAAACCTCATTAGAATGTCTAGAGCTCATTGAAGAAATCGACTGTCTTGATGGCACTGCAATCACACAAGCGATGAAGGAGGCTTATTGTGCTGTGGCTGTGGAGTGCAGTGTTCGGTACCTTGATCCATGTCCAGGTAAGAACGCCCACGGTTTGTTTGACGATGCTGTTAATAAGACATGGAGGGGCCGAATTCGGAAAATGATGGAGGCGATGGTGTTATCTTCGTCGGGGAAGATATGTCACTTACTTACGCCTGAGTTGATTGAGTGGAAGGACGTCATTGAGTCTGCACGTTGGGACGCAGAGGTATGCGAGAGATTGACAAACATGAATACCAGAAAAAATGCCCTCGATAAGGTTAGGGTTTATCTGCAAGAAACTAGGGCATCCATGGGCCCTTCTTATCTTGAGTCAGCAGCTTTATTGTCTGAAGACGAGGGCTTGAGAAGTTCAAGTGGGGATAAGATTGGTGACGCAGAGCTTGCTGCTAGTATACCCTATGAAGGTTGTGATAAGAGTGTTTCTGAATCTGCCTTGGTCATTGATCGGATGAATGTGTGTGAAGGAAGGTTACATTGTTCAACTAACAGGACTGTGGAGGGTTTAGTTGTGTCTGATGGAAGTGCATTGCAAAATGCTGCAATCTGCATGGACAAGGCGCCAGAGACAGGTGGGAATCAGGATAGTGAGCAATTGGGTGAGACTGACTTGACTCAAAGGATAAATGAAGCAATTCGAAAGGGCAAGATGCCTCTTGAAGATAATCGTGATGTGCCCTCTACATGTAGAGGGGTTATAATTATTGATGCTGGGAAAGTAGGGCCAGCGACAGTTTGTAGCAAAGATCATAATGCATCTGACATTCAAATTGAAAAACTTTGGAAATCTCTTGCATCAAGTTCTTCGGAGTTGCCACCATTGGTGAAGGATCCTCTTCCTGATGCATTACATAAATCTGACCTTGTAAGATCTGAATTAGCAACAAAGGCTGTGAATCAAGAGCCTCCTTCTGAAAATCAGGGTACCGCTGTAAATGTACCCGAACAAAATACTTGCTGGAGCATGGTGCCATATCAATCTATCGATGATAATTTAAAGGAACAGCTTTCTGCCAATCGCAGTAATTCTCATCGTCCTGGGTGGATGGAACAAGATAGTACTGCCCATACTTACGAGTGGGGCGATTCATTTGATGACTTGCCTGGGGGAAGCCCCAACAAAAGGAGGAAAAAGGTAAAATGGAGTTCTGAAGAAGAGGATGCATTAAGGGAGGGTGTAAAGAAATTTGGCAGAGGAAGCTGGAAGCAAATCCTAAGATTTCACAGCGAGATATTTAACAAGGCAGGAAGAACAGAAGTTGATTTGAAGGATAAATGGAGGAATTTGACAAGGTGGCCTTGA 1581 0.4459 MDLDMRRWILEFLLTSSVVPDTIAKKVCTVLPLPGFDSRLGKILALKSIESEVANALFTETSLECLELIEEIDCLDGTAITQAMKEAYCAVAVECSVRYLDPCPGKNAHGLFDDAVNKTWRGRIRKMMEAMVLSSSGKICHLLTPELIEWKDVIESARWDAEVCERLTNMNTRKNALDKVRVYLQETRASMGPSYLESAALLSEDEGLRSSSGDKIGDAELAASIPYEGCDKSVSESALVIDRMNVCEGRLHCSTNRTVEGLVVSDGSALQNAAICMDKAPETGGNQDSEQLGETDLTQRINEAIRKGKMPLEDNRDVPSTCRGVIIIDAGKVGPATVCSKDHNASDIQIEKLWKSLASSSSELPPLVKDPLPDALHKSDLVRSELATKAVNQEPPSENQGTAVNVPEQNTCWSMVPYQSIDDNLKEQLSANRSNSHRPGWMEQDSTAHTYEWGDSFDDLPGGSPNKRRKKVKWSSEEEDALREGVKKFGRGSWKQILRFHSEIFNKAGRTEVDLKDKWRNLTRWP 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0072 526 CDD SANT_TRF 472 524 - -
Acco11g0072 526 Gene3D - 464 525 - -
Acco11g0072 526 Pfam Myb-like DNA-binding domain 471 522 IPR001005 -
Acco11g0072 526 ProSiteProfiles Myb-like domain profile. 466 523 IPR001005 -
Acco11g0072 526 SMART sant 470 525 IPR001005 -
Acco11g0072 526 MobiDBLite consensus disorder prediction 462 477 - -
Acco11g0072 526 MobiDBLite consensus disorder prediction 452 477 - -
Acco11g0072 526 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 466 526 IPR017930 -
Acco11g0072 526 PANTHER MYB TRANSCRIPTION FACTOR 1 524 - -
Acco11g0072 526 SUPERFAMILY Homeodomain-like 468 524 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0072 Acco-ChrAcco11 888401 891530 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0072 474 522 Single Myb Histone (SMH) Gene Family AT1G15720 61.224 5.30e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Acco11g0072 Myb_DNA-binding 7.7e-10 CL0123