Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0039 ATGGCGGCATCTTCGTCGTCGGCGTCGCTGTTCGGAATCAGAGGAGATCAGAATCCGATGAATCAGCAGCAGCATTCATCAACTACTCCAACTTCATCAACAAACGCAGCTGCACCACCCCAGAAGAAGAAGAGAAACCAACCAGGAACACCAAATCCAGATGCAGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTTCAAAGAGAGCAGAACCTACAACTTCACAGAAGAGGACACAACCTACCATGGAAGCTAAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTATGTCCTGAGCCCACATGTGTCCACCATGACCCCTCTAGAGCTCTTGGTGACCTCACCGGCATTAAGAAACACTACTCGAGAAAACACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCAAAGAAATACGCCGTTCAGTCTGATTGGAAAGCTCATTCTAAGACTTGTGGAACCAGAGAATACAGGTGCGACTGTGGCACTCTCTTCTCCAGACGAGACAGTTTTATCACCCACAGGGCGTTTTGTGATGCACTGGCTCAAGAAAGTGCGAGACAACCTTCCAACTTGATTAATGGGGGCCAGCTCTATGGAAGTGACAACATGGCTTTGGGGTTATCTCAGGTGGCTTCCCACCTTTCAGCCGCCGTCCATGACCACCACCCCAACAACCAACCCAGCACTGACATTTTGCGGGCAGCCGCGGCGGCTCGGGCAGGCCATTTCGACCACCTTCTTCCACCATCCTTGATTAGACCACCACCACCACCACCACAAATGGTGGCCAATGTTGCTTCTCCTCCCGCCTTCTTCATGGCGGAGCAATCGAACCAGAACTATTACCGCCATGATCATCATCACCAGCAACACAAGCACCAATTCCATGGACTCATGCAATTCTCTGATCTTCATCATCACAACAATAGTAACAATTCTCCAACATCCGCACCAAATAATAGTGCCACCCTCTTCAACCTTCCTCCATTCCTCTCCAGCACCACCAACAATAACAGTTCTTTGTCTGAAGCGGCCGGAGGAGGAGGACACGTGGACGGCGGCCCCAACAACAACTTCTTCTCAGACCAGATGATCACAAGCTCAAGTGCTCCTTCTCTTTTCAGCACATCTCTACAGAACAGCAGCAACAGCAGCGTTATCCCTCACATGTCTGCAACAGCACTGCTTCAAAAGGCCGCTCAAATCGGTGCGAGTTCCAGCAACAACAGCGCCACAGCCTCGCTTCTCAGAAGCTTCGGGAGCTCCTCCTCCACCACCACCGGATCCAAGTCTGATCACCACCACCACCACCACAACAACAACAGGCCACCGCAACCACAGCAGCTGGTAGGACCAAACTATGGCGCTATTTTCGGAGGGCCGTCGTCGTCGACGACGACCAACAACGATGATCAGAACAGCGATCTTCAAGACTTGATGAACACATTCACTTCTGTTGGTGGGTATGACGGATACGATCATCGTAATCAGCAGCATCAACAAAACAACTCATCAAACACAAGAGATCTGAAACTACCCGTAGGATCTGACAGGCTAACTCGAGATTTTCTTGGTGTTGGGCAAATTGTGAGAAGCATGAGTGGAGGAATATCACCCAGAGATCATCAGCAGCAGCAGCAACAAGGGTTCGTGAACTTGGGTTCTATGGAGACTCATCATCACAGAAATGGTAATAATAACAATGCTGCGCCGTCAGGCCCATCTTATGGAGGTGGTGGAGGGAATTTTCAGTGA 1809 0.497 MAASSSSASLFGIRGDQNPMNQQQHSSTTPTSSTNAAAPPQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSNLINGGQLYGSDNMALGLSQVASHLSAAVHDHHPNNQPSTDILRAAAAARAGHFDHLLPPSLIRPPPPPPQMVANVASPPAFFMAEQSNQNYYRHDHHHQQHKHQFHGLMQFSDLHHHNNSNNSPTSAPNNSATLFNLPPFLSSTTNNNSSLSEAAGGGGHVDGGPNNNFFSDQMITSSSAPSLFSTSLQNSSNSSVIPHMSATALLQKAAQIGASSSNNSATASLLRSFGSSSSTTTGSKSDHHHHHHNNNRPPQPQQLVGPNYGAIFGGPSSSTTTNNDDQNSDLQDLMNTFTSVGGYDGYDHRNQQHQQNNSSNTRDLKLPVGSDRLTRDFLGVGQIVRSMSGGISPRDHQQQQQQGFVNLGSMETHHHRNGNNNNAAPSGPSYGGGGGNFQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0039 602 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 561 IPR031140 -
Acco11g0039 602 Gene3D Classic Zinc Finger 50 119 - -
Acco11g0039 602 MobiDBLite consensus disorder prediction 476 502 - -
Acco11g0039 602 MobiDBLite consensus disorder prediction 512 529 - -
Acco11g0039 602 Gene3D Classic Zinc Finger 125 204 - -
Acco11g0039 602 MobiDBLite consensus disorder prediction 1 56 - -
Acco11g0039 602 MobiDBLite consensus disorder prediction 321 382 - -
Acco11g0039 602 MobiDBLite consensus disorder prediction 574 602 - -
Acco11g0039 602 FunFam protein indeterminate-domain 12-like 50 118 - -
Acco11g0039 602 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Acco11g0039 602 SMART c2h2final6 147 167 IPR013087 -
Acco11g0039 602 SMART c2h2final6 112 142 IPR013087 -
Acco11g0039 602 SMART c2h2final6 71 93 IPR013087 -
Acco11g0039 602 MobiDBLite consensus disorder prediction 435 531 - -
Acco11g0039 602 MobiDBLite consensus disorder prediction 321 362 - -
Acco11g0039 602 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Acco11g0039 602 MobiDBLite consensus disorder prediction 1 48 - -
Acco11g0039 602 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Acco11g0039 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Acco11g0039 602 MobiDBLite consensus disorder prediction 574 591 - -
Acco11g0039 602 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0039 Acco-ChrAcco11 632966 636607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0039 41 553 IDZ Gene Family AT2G02070 47.751 2.31e-133 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco11g0039 zf-C2H2_jaz 3.7e-05 CL0361