Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0036 ATGGCATCGGCCTTTATCAAGCTGGACGATTCCCCCATGTTTCAGAAGCAGATATGTTCTCTTGAAGAAACGACTGATGAATTAGCAGATCGCTGCCAGAAACTATACAAAGGGTGCAAGAAATTTATGGCAGCTGTAGGAGAAGCTTATAATGGAGACATTGCCTTCGCAGACGCTTTAGAAATATTTGGCGGTGGGCGGGATGATCCTGTTAGTGTATCAATTGGAGGACCTGTCATATCTAAATTTATTAGTGCACTTCATGAGCTTGCATCTTTTAAAGAGCTTCTCCGGTCACAGGTGGAGCATGTGTTGATCGATCGGTTGGTGCAGTTTATGAATGTTGATCTACAAGATGCAAAGGATTCTCGCACTCGTTTTGACAAAGCTGCACATTCATATGATCAGGCACGAGAAAAATTTGTGTCTTTGAAGAAGAATACACGTGAAGACATTGTTGCTGGATTAGAAGAGGGTCTTCAAAATTCAAAGTCAGCATTCGAGAAAAGTCGCTTTAATCTAGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTATGAATTCTTGGAGTCCTTTAGTGCAATAATGGATGCTCATCTTAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCTTATATTCACCAGGTATTGACATATGCACAACAATCTAAAGAGCTGGCCAATGCTGAACAAGACAAGCTTGCACAACGAATTCAGAAATATAGAACACAAGCCGAGCTGGACAATTTACGAGCTTCTAGTAATGCTGATACTTTATCTGGTGTCGACAGCAGCCGCGTTGTTGGTTTGAACTCATATAAGAACTTTGAAGTAGGGATTCCACCTGTGCCCCAAGGAGAGTGTCAAACAATTAAGCAAGGCTATCTGCTAAAACGATCGTCAAGATTGCGAGGAGATTGGAAGCGGAGGTTCTTTGTGCTTGACAACCACGGGAGTTTATCTTACTATAGAGGGAAGGGAGCCAAGGCAATGGGCTCTCAATCATATAATTTTATTAGATCAACTGAACAAAACAGTGGCATGTTTGGTAGATTCCGCTCTAGGCACAACAGAACAGCATCACTTAATGAAGAAATTCTGAGTTGCCGTGCAGTTGATCTGTGCACATCAACTATAAAGATGGATGCAGATGATTCAGATCTACGACTTTGCTTTCGCATAATTTCCCCGTCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGGAGCTATTACATCGCTTTTCAACTCTCAGTTTCTTCAACAGCCCAATCGGGTTGGATTGCATCAAGAAAATGATAAATCAGCCATTGTTGCTTCATGCTATAGTCAATCACAGCATAGCCATGGATCTTTGACTGAAGACATATATTCCAATGAAGTGGAGAGTGTCTCTAAGATTTTATGGGGAATTCCTGGAAATAATAGGTGTGCTGAGTGTAGTGCAACTGAACCGGACTGGGCATCTCTTAACCTTGGGATATTGCTGTGTATTGAATGCTCTGGCGTTCATCGAAATCTTGGAGTTCACATATCAAAGGTGAGATCTATAACATTAGACGTCAAGGTTTGGGAACCTACTGTTCTGGACTTATTCCGGAACTTGGGTAATGCATATTGTAATTCTATATGGGAGGGTTTGCTACATGACAATGAAAGGAAAAATGAGCCAGATGCCTTTCCAATTAAACCATGCCCTACGGATGCCTTTCAAGAGAAGGAAAAGTACATCCATGCGAAGTACATAGAGAAGTCACTAATCAATAAAGAGACTGTACCCGGGAATCCTTCTTTTACCTTAAGAATATGGCAAGCAGTTCAGGCTTTGAACGTACGGGAAGTGTATCGCCTCATTGTCACTTCTGATGTAACTCTGGTAAACACCAAATATGATGATGCGGCTCACCATGCTGAGGCAGAAAATTTGGATTTAAGATGTAGCACAACTGAAAGCCAGCAAGATCCTGATAATCCTGTGAGCTGTGTCCAAGGTTGTTCATTGTTGCATCTGGCATGTCATTCTGGCAGTGAACTAATGGTTGAGTTGTTGCTTCAATTTGGTGCGGATATAAATGTGCGTGACTCCTATGGAAAGACTCCCTTGCATCATTGCATTTCCAGAGGAAACCATCCTTTGGCAAAGCTTCTACTGCGAAGGGGTGCAAGACCTTCCATTAAAGATGGTGATGGATTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTGGCTGAATCCGCTTGA 2319 0.4179 MASAFIKLDDSPMFQKQICSLEETTDELADRCQKLYKGCKKFMAAVGEAYNGDIAFADALEIFGGGRDDPVSVSIGGPVISKFISALHELASFKELLRSQVEHVLIDRLVQFMNVDLQDAKDSRTRFDKAAHSYDQAREKFVSLKKNTREDIVAGLEEGLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANAEQDKLAQRIQKYRTQAELDNLRASSNADTLSGVDSSRVVGLNSYKNFEVGIPPVPQGECQTIKQGYLLKRSSRLRGDWKRRFFVLDNHGSLSYYRGKGAKAMGSQSYNFIRSTEQNSGMFGRFRSRHNRTASLNEEILSCRAVDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPNRVGLHQENDKSAIVASCYSQSQHSHGSLTEDIYSNEVESVSKILWGIPGNNRCAECSATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYCNSIWEGLLHDNERKNEPDAFPIKPCPTDAFQEKEKYIHAKYIEKSLINKETVPGNPSFTLRIWQAVQALNVREVYRLIVTSDVTLVNTKYDDAAHHAEAENLDLRCSTTESQQDPDNPVSCVQGCSLLHLACHSGSELMVELLLQFGADINVRDSYGKTPLHHCISRGNHPLAKLLLRRGARPSIKDGDGFTALERAMEMGAITDEELFILLAESA 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0036 772 Gene3D - 646 771 IPR036770 -
Acco11g0036 772 SMART PH_update 295 430 IPR001849 -
Acco11g0036 772 PRINTS HIV Rev interacting protein signature 490 509 IPR001164 GO:0005096
Acco11g0036 772 PRINTS HIV Rev interacting protein signature 509 526 IPR001164 GO:0005096
Acco11g0036 772 PRINTS HIV Rev interacting protein signature 532 553 IPR001164 GO:0005096
Acco11g0036 772 Pfam BAR domain of APPL family 8 235 IPR004148 GO:0005515|GO:0005737
Acco11g0036 772 ProSiteProfiles Ankyrin repeat region circular profile. 679 710 - -
Acco11g0036 772 Gene3D Arf GTPase activating protein 459 608 IPR038508 -
Acco11g0036 772 Pfam Ankyrin repeats (many copies) 682 733 IPR002110 GO:0005515
Acco11g0036 772 Pfam PH domain 296 427 IPR001849 -
Acco11g0036 772 ProSiteProfiles Ankyrin repeat region circular profile. 712 743 - -
Acco11g0036 772 Coils Coil 229 249 - -
Acco11g0036 772 CDD PH_ACAP 297 432 - -
Acco11g0036 772 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Acco11g0036 772 Pfam Putative GTPase activating protein for Arf 481 605 IPR001164 GO:0005096
Acco11g0036 772 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Acco11g0036 772 CDD ArfGap 482 597 - -
Acco11g0036 772 Gene3D - 295 432 IPR011993 -
Acco11g0036 772 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Acco11g0036 772 SUPERFAMILY ArfGap/RecO-like zinc finger 478 603 IPR037278 -
Acco11g0036 772 CDD BAR_SFC_plant 16 217 IPR035670 -
Acco11g0036 772 ProSiteProfiles Ankyrin repeat profile. 679 711 IPR002110 GO:0005515
Acco11g0036 772 SMART ANK_2a 712 741 IPR002110 GO:0005515
Acco11g0036 772 SMART ANK_2a 679 708 IPR002110 GO:0005515
Acco11g0036 772 PANTHER CENTAURIN/ARF 4 770 IPR045258 GO:0005096
Acco11g0036 772 ProSiteProfiles Ankyrin repeat profile. 712 744 IPR002110 GO:0005515
Acco11g0036 772 ProSiteProfiles ARF GTPase-activating proteins domain profile. 478 610 IPR001164 GO:0005096
Acco11g0036 772 SMART arf_gap_3 478 610 IPR001164 GO:0005096
Acco11g0036 772 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Acco11g0036 772 SUPERFAMILY PH domain-like 291 440 - -
Acco11g0036 772 SUPERFAMILY Ankyrin repeat 660 759 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0036 Acco-ChrAcco11 565171 587937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0036 488 597 C2H2 Transcription Factor Family AT4G05330 42.342 1.83e-20 91.7