Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0012 ATGGGCAAATCCAGCAAGAAATCAGCTCCTAAAGTTGATTCTGCTCCAGCTGTTATTCCGCCTTCGAAGTCTGTAAAGAAAGGCAAAAGGGAAGCCGAGGATGAACTTGAGAAGCTAGTGAGTGCAAAGAAACAGAAGAGAGATGAAGTTGCTGATAAGAAGAAGGCCAAGGTGCAGAAAAACAAGAAAGAAAGTAGTTCAGATGATGATTCTTCATCAGAATCTTTGGAAGAAAAGAAAACAGTCACAAAAGCTGTTCTTCCATCAAAGACAAGACCTTCTAAGAACGGCACCCTAAGTGGCCAGTTGAACAGAGACAAGCCATCTAGTAGCTCCACTTCTGAATCCTCTGATGATGACTCCGATAGTGATGATGCTGGAAAATCCAAGGTTGCCTCTGCTGCTGGTAAGAATGGAACTCTTTCAACAAAGAAGAAAGTTGAGTCAAGTGACAGCTCAGATACTGAGAGCAGTTCAGATGAAGAAAATGATGTGAGGACTGAAGTTGCCCCGCTATCCAAGAAGATGCCTGTTGCTGCAGCTCAGAAAGTTGAATCAGACTCAGAACCTGACAGCAGCTCTGATGAGGATGATGTCCCTACAAAATCATCAAAGAAGTTGCCTGCTGCTCCTGCCGCGGGTAAAAGTAAACCTGTCAAAAAAATTGAGTCTAGTGATGACACAGCCTCTGATAGTAGCTCAGATGAAGATGATGATCTTGCAACAAAGAAGTTGCCTGCAATAACAGTTCCTTCAAAGAAGAAAGTTGAGAGCAGTGAAAGCTCTGATGAAGATAATGAATCCTCTGACAGTGATTCTGAGGTTGAGAAGAAAACTGCTCCCAAGGCTGAAGCTAAAGCTGCAGCTGCTGTGAAGACAGCTAAAGAGGAGTCTAGTGAAAGTTCATCTGAAGATGACTCTTCAGGAGATGAGAAAGCTGCTCCCCAGTCTATTATTAAGGCATCTGCTGGTGTGAAGACTGTAAAAAAGGAGTCTAGTGGAAGTTCATCTGAAGATGACTCTTCGGAAGATGAGGATAAGATGGATGTTGATGAGGACAGTAGTTCTGAAGAAAGTGAGGAGGAGCCGCCAAAGAAGTCTGTAAAAGCTATTAAGGAAAGCAGTGAAAGTTCAGAAAGCTCAGATGACAGCGAGGATGAAAGTGAGACACCCTCCAAGACTCAGAAAAATGCTAAGGATGTGGAGATGGTTGGTGCAGCATCAGCAAAGTTAAATGGAAAGAAAGCTCCTAGCACCCCAGCTACTCCAAAAGCACAGAATGGCACATCAAAGACTTTGTTTGTTGGAAATTTGTCATATAATGTAGAACAGACTGATGTGGAAAACTTTTTTAAAGATTGTGAAGTGGTTGATGTACGTATAGCCTCAGATGATAATGGCAGATCTAGAGGCTTTGGGCATGTTGAATTTGCCACACAGGAAGCAGCACAAAAAGCCCTTCAATTGAATGGGGAGGAATTGCTTCAGCGTCCCGTGAAACTTGATTTAGCTCGTGAAAAGGGAGCATATACCCCCAATAGCGGCAACTGGAGCAATTCATTCCAGAAAGGAGGACAGGCTCAAGCTCATACATTATTTGTTAAGGGTTTTGATACATCCCTGGGGGAAGATGAGGTTAGAACGAATCTGAAAGAGCATTTTAGTTGTGGAGAGATTACAAGGATAGCAATTCCTAAAGATTATGAGACCGGTGCTTTCAAGGGGTATGCCTACATGGATTTCAAGGATGTTAATGCCCTTAACAAAGCGCTAGAATTGAACGGAAGTGAGCTTGGAGATGGATATTATTTGACTGTTGATGAGGCAAGACCTCGAGCTGATAATCAAGGTGCCAGTGGTGGTAGAGGTGGTGGAAGGAGTGGTGGAGGTCAATTTGGTGGCAGAGGTGGCAGAGGTCAGTTTGGGGGAAGAGGTGGCAGAGGTCAATTTGGGGGAAGAGGTGGTCGTGGAAGAGGTGGCGGCGGCAGGGGGCGTGGCACACCCTATAAACCAAGTCTTGCTGCTGCAGGCACAGGGACAAAGACCAAATTTGCAGATGAAGATTAA 2067 0.4441 MGKSSKKSAPKVDSAPAVIPPSKSVKKGKREAEDELEKLVSAKKQKRDEVADKKKAKVQKNKKESSSDDDSSSESLEEKKTVTKAVLPSKTRPSKNGTLSGQLNRDKPSSSSTSESSDDDSDSDDAGKSKVASAAGKNGTLSTKKKVESSDSSDTESSSDEENDVRTEVAPLSKKMPVAAAQKVESDSEPDSSSDEDDVPTKSSKKLPAAPAAGKSKPVKKIESSDDTASDSSSDEDDDLATKKLPAITVPSKKKVESSESSDEDNESSDSDSEVEKKTAPKAEAKAAAAVKTAKEESSESSSEDDSSGDEKAAPQSIIKASAGVKTVKKESSGSSSEDDSSEDEDKMDVDEDSSSEESEEEPPKKSVKAIKESSESSESSDDSEDESETPSKTQKNAKDVEMVGAASAKLNGKKAPSTPATPKAQNGTSKTLFVGNLSYNVEQTDVENFFKDCEVVDVRIASDDNGRSRGFGHVEFATQEAAQKALQLNGEELLQRPVKLDLAREKGAYTPNSGNWSNSFQKGGQAQAHTLFVKGFDTSLGEDEVRTNLKEHFSCGEITRIAIPKDYETGAFKGYAYMDFKDVNALNKALELNGSELGDGYYLTVDEARPRADNQGASGGRGGGRSGGGQFGGRGGRGQFGGRGGRGQFGGRGGRGRGGGGRGRGTPYKPSLAAAGTGTKTKFADED 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0012 688 MobiDBLite consensus disorder prediction 147 169 - -
Acco11g0012 688 MobiDBLite consensus disorder prediction 359 378 - -
Acco11g0012 688 SUPERFAMILY RNA-binding domain, RBD 420 522 IPR035979 GO:0003676
Acco11g0012 688 MobiDBLite consensus disorder prediction 1 401 - -
Acco11g0012 688 MobiDBLite consensus disorder prediction 87 116 - -
Acco11g0012 688 MobiDBLite consensus disorder prediction 338 358 - -
Acco11g0012 688 FunFam Nucleolin 2 515 667 - -
Acco11g0012 688 SUPERFAMILY RNA-binding domain, RBD 523 640 IPR035979 GO:0003676
Acco11g0012 688 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 532 600 IPR000504 GO:0003723
Acco11g0012 688 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 433 499 IPR000504 GO:0003723
Acco11g0012 688 MobiDBLite consensus disorder prediction 612 688 - -
Acco11g0012 688 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 530 611 IPR000504 GO:0003723
Acco11g0012 688 MobiDBLite consensus disorder prediction 271 311 - -
Acco11g0012 688 MobiDBLite consensus disorder prediction 24 85 - -
Acco11g0012 688 Gene3D - 522 645 IPR012677 -
Acco11g0012 688 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 271 546 - -
Acco11g0012 688 MobiDBLite consensus disorder prediction 409 428 - -
Acco11g0012 688 Coils Coil 25 56 - -
Acco11g0012 688 SMART rrm1_1 531 607 IPR000504 GO:0003723
Acco11g0012 688 SMART rrm1_1 432 502 IPR000504 GO:0003723
Acco11g0012 688 Gene3D - 419 511 IPR012677 -
Acco11g0012 688 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 431 506 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0012 Acco-ChrAcco11 248505 256050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0012 411 599 Eukaryotic Initiation Factors Gene Family AT2G36660 28.205 5.16e-10 60.8