Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g0009 ATGGGTCGAGGGAAGATAGAGATCAAGAGGATTGAGAACACGACCACCAGACAGGTGACGTTCTCAAAACGCAGAGCTGGGCTTGTGAAGAAGACACATGAGCTTTCTGTGCTCTGTGATGCTCAAATTGGCCTCATCATCTTCTCTAGCACCGGCAAGATGTTTCAGTACTGCACCGAACCTTTCAGGATGGACCAGATCATTGAAAGATACCAGAAAGCTACAGGAGTTCGCATACCTGAACATGATAGTCGGGAAGATATATTGAGTGAAATGGCAATGCTGAGGCAGGAGAGTCTGCGACTTGAAATGGGAATCGGAAGGTATAGAGGAGAGAGCATGGGCAGTTTACAGTATGAGGAGCTGAGTAAACTTGAACAAGACCTTGAGATATCAGTCGCCAAGGTCCGAAATCGCAAGAATGATGTGTTGCAACAGCAGCTGGATAATCTGCGAAGAAAGGAACGAATGATGGAAGAAGAGAACAGCTATCTGTCGCATTTGATTGAGGAGCAGGAGCGAGGAGGAGTGGTGGTGGAGAACCAGATGGTGGAGCAGCTGGCGTTGTATGAGGAAGGCCAAACTTGTCTTCAACTTGCTCCTCTCCACCTTCATCCCTATCTCCAGCTTGCCCAACCCCACATTCACCCTCCTTCTTCTCACCCCCTTTAA 672 0.4836 MGRGKIEIKRIENTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSSTGKMFQYCTEPFRMDQIIERYQKATGVRIPEHDSREDILSEMAMLRQESLRLEMGIGRYRGESMGSLQYEELSKLEQDLEISVAKVRNRKNDVLQQQLDNLRRKERMMEEENSYLSHLIEEQERGGVVVENQMVEQLALYEEGQTCLQLAPLHLHPYLQLAQPHIHPPSSHPL 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g0009 223 Coils Coil 119 161 - -
Acco11g0009 223 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Acco11g0009 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Acco11g0009 223 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Acco11g0009 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Acco11g0009 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Acco11g0009 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Acco11g0009 223 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Acco11g0009 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Acco11g0009 223 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Acco11g0009 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Acco11g0009 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Acco11g0009 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Acco11g0009 223 Pfam K-box region 81 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g0009 Acco-ChrAcco11 193063 195300 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g0009 1 215 MADS-box Gene Family AT5G23260 46.502 1.80e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Acco11g0009 K-box 8.3e-19 No_clan