LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco10g2761	ATGGTGTTGCTGGACATGGAAAAGGCGTTTCTCATCTTCACGACGGCGCTGCTAACATGCGCCGCCTCGGGAGTGTCCCTGAAGCTCTGCCCAAACTGCGGCAACACCTCAGTGCCTTACCCCCTCAGCACTTCTGCCGAGTGCGGTGACCCGTCCTACAAGATCCGGTGCAGCTCCGGGTCCCTCATGTTGGACACCCTCAACAATTCGTACCCCATCCACTCCATCCACCCCCAAACCCAACGCCTCCTCATCCGACCCGCCTCCCTCCTACCCAACACCTGCGTCACCTCCGATAAGATCTACGGCGGCATCCTCCTCAACAACACCCTCCCCTTCAACATCACCAGCAGCAACACCATCCTCTACCTCAACTGTACCCCCATCCTCCTCCTTTCCCCCTTAAACTGCTCCTCCTCCAGCCTCTGCCACACCTACATCAACGCCACCCCACGCGCCTCTTCCTGCCTCCTCGCCCCTATCTGCTGTACCGGTGGCTCCAGCAACTCCTACATGATTCGCGTCCGCGATGTGGGATGCAGCGCTTACTCCAGTTTCGTCAACCTCAACCCCTCTCTGCCGCTAACCAGCTGGCCTGAACCGGGCCTCGAAATTCAGTGGGTTACGCCGCCTGAACCGCTCTGTGGGTCCCAGGGGGATTGCGACGGCGGCAACTCCACTTGTGCGCCGGACCCATCCAGAAGCGGCGTCAAGAGGTGCTTTTGTAACGCCGGCCTTGTGTGGGACCCTATTCAAGGGGTGTGCGCAGAAAAAATCAGCTGTCAGCAGAGTCTGGATGGTTGCGGCGGCTCCGATCGAACTGCACTAATAGCAGGTTTGACGAGTGGGATTACCGCAGCAGTGATAGTAGCCCTCGTTGTGGTTCTGCTCTACAAACGGCACAGACGAGTCAAGGAGGCCCAAGAACGGCTGATCAGAGAGAGGGAGGGTATCCTGAATGCGAGTGGCGGAGGCAGAGCCGCAAAGCTCTTCTCCGGCAAAGAGCTGAAGAAAGCCACCAACAACTTCTCCAGAGACCGCCTCCTAGGCACTGGCGGCTACGGCGAAGTCTACAAAGGCGTCCTCCAGGATGGCACCGTCGTAGCCGTCAAATGCGCAAAACTCGGCAACGCCAAAAGCACCGACCAAGTGCTAAACGAGGTGCGCATATTGTGCCAAGTCCACCACCGTAACCTTGTCGGTCTTCTGGGTTGCTGCGTGGAGTTAGACCAGCCCATGATGGTGTATGAATTCGTAGAGAACGGCACTGTCCTCGATCACCTGTCCATAGAGCGGGGCTCTCTCACCTGGTCTCATCGCCTTCGAGTGGCTCACGACACAGCCCAAGGTCTGGCGTATCTTCACTTCTCCGCCGTGCCACCTATATACCACAGGGACGTCAAGTCTAGTAATATTCTGCTAGACAATAAATTAAACGCAAAGGTTTCGGATTTTGGGCTGTCGAGGCTGGCCGAAACAGATTTGAGCCACATCTCAACGTGCGCTCAGGGGACGCTGGGGTATTTAGATCCAGAGTATTACAGGAATTACCAGTTGACGGATAAGAGCGATGTGTATAGTTTTGGGGTGGTGCTGTTAGAGCTGTTGACGGCGCAAAGGGCCATAGATTTCAACAGGCCAGCAGATGATGTGAACTTGGCGGTTTATGTGCAGAGGATGGCGGAGGAAGAGAAGTTGATGGAGGTCATAGAGCCGGGGCTGAGAAACGGGGCCACTACTTTGGAAGTGGACACAATGAAGGCGTTGGCGTTTTTGGCCTTGGGATGCTTGGAGGAGCGGAGGCAGAACCGACCTTCCATGAAGGAGGTGGTTGAGGAGATTGAGTATATCATTGGTATTACCACCACCAAACCCGCCCAAAGCTAG	1887	0.5612	MVLLDMEKAFLIFTTALLTCAASGVSLKLCPNCGNTSVPYPLSTSAECGDPSYKIRCSSGSLMLDTLNNSYPIHSIHPQTQRLLIRPASLLPNTCVTSDKIYGGILLNNTLPFNITSSNTILYLNCTPILLLSPLNCSSSSLCHTYINATPRASSCLLAPICCTGGSSNSYMIRVRDVGCSAYSSFVNLNPSLPLTSWPEPGLEIQWVTPPEPLCGSQGDCDGGNSTCAPDPSRSGVKRCFCNAGLVWDPIQGVCAEKISCQQSLDGCGGSDRTALIAGLTSGITAAVIVALVVVLLYKRHRRVKEAQERLIREREGILNASGGGRAAKLFSGKELKKATNNFSRDRLLGTGGYGEVYKGVLQDGTVVAVKCAKLGNAKSTDQVLNEVRILCQVHHRNLVGLLGCCVELDQPMMVYEFVENGTVLDHLSIERGSLTWSHRLRVAHDTAQGLAYLHFSAVPPIYHRDVKSSNILLDNKLNAKVSDFGLSRLAETDLSHISTCAQGTLGYLDPEYYRNYQLTDKSDVYSFGVVLLELLTAQRAIDFNRPADDVNLAVYVQRMAEEEKLMEVIEPGLRNGATTLEVDTMKALAFLALGCLEERRQNRPSMKEVVEEIEYIIGITTTKPAQS	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco10g2761	628	Pfam	Protein tyrosine and serine/threonine kinase	346	613	IPR001245	GO:0004672\|GO:0006468
	Acco10g2761	628	Gene3D	Phosphorylase Kinase; domain 1	321	418	-	-
	Acco10g2761	628	SUPERFAMILY	Protein kinase-like (PK-like)	328	614	IPR011009	-
	Acco10g2761	628	Pfam	Wall-associated receptor kinase galacturonan-binding	30	84	IPR025287	GO:0030247
	Acco10g2761	628	ProSiteProfiles	Protein kinase domain profile.	343	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g2761	628	FunFam	Wall-associated receptor kinase-like 20	305	418	-	-
	Acco10g2761	628	ProSitePatterns	Protein kinases ATP-binding region signature.	349	371	IPR017441	GO:0005524
	Acco10g2761	628	SMART	serkin_6	343	617	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco10g2761	628	CDD	STKc_IRAK	349	615	-	-
	Acco10g2761	628	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	18	617	IPR044652	GO:0004672
	Acco10g2761	628	Gene3D	Transferase(Phosphotransferase) domain 1	419	624	-	-
	Acco10g2761	628	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	462	474	IPR008271	GO:0004672\|GO:0006468
	Acco10g2761	628	FunFam	Wall-associated receptor kinase-like 20	419	627	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco10g2761	Acco-ChrAcco10	37847542	37849659	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco10g2761	30	620	Receptor kinase-like Gene Family	AT5G02070	51.797	0.0	629

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Acco10g2761		PK_Tyr_Ser-Thr	5.9e-48	CL0016