Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2728 ATGGCCTCTGGCTACCGGGATCGTACGTCGGAGTTCCGATCTCTCTCTCAAACTCTGAAGAAGATTGAGGGATTCTCATTGCCTAATCAAGATGAAGATGTTCCCTCCGCATCCAAACAATACACTCCCGTCTCCTATTCTGGATCTGAATTCAACAGAAAGGCCTCTCGAATCGGGTTGGGTATCCATGAAACCTCCCAGAAGATTTTGAGGCTTACTCAATTGGCAAAGAAGTCATCCATGTTTAATGATCCCACTGTGGAAATACAAGAATTAACGGCTTTGATCAAGAACGACATCACGGCATTGAATTCAGCTCTTTTAGATTTACAAACTATTCAGAACATGGAAATAGCTGATGGAAATTATTCGGACGATAGAATTGTTCATTCAACAGCTGTTTGTGATGACTTAAAGGGAAAACTTATGGGGGCAACGAAGCAGCTTCAAGATGTGTTAACTGCTAGGACGGAGAATATCAAGGCCCATGAGAATAGGAAGCAGATATTTTCCAAGAAAGCATCTAGGGACATTCCTTTCCAGCATCGATCAAAGCCAGTGACTGAGCCACCCCCTTGGTCAAATTCATTAAGTGCATCCGAAAGTTCACAGCAAACATCAGCATCCCTATCAAATGAAGTTACACCGAGCAATCAATTAAGACGAAGGCTAGCTACTGACAACACTCCATCCCAGCAAATGGAAATGTCTATGATGCAGCAGGTTGTCCCAAGACAAGAAAGTTATGCTCAGAGTCGTGCTTCTGCTCTGCACAGTGTGGAATCTACTATCACAGAACTTAGTGGGATCTTCACTCATTTGGCTACAATGGTTGCTCATCAAGGGGAATTAGCTATCAGGATTGACGACAACATGGATGAATCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAAGCATCTCAGCAAAATATCATCGAATAGGTGGCTTCTAATCAAGATATTTGCCGTCCTGATTCTTTTTCTGCTGATCTTCATACTCTTCGTGGCCTAA 1020 0.4275 MASGYRDRTSEFRSLSQTLKKIEGFSLPNQDEDVPSASKQYTPVSYSGSEFNRKASRIGLGIHETSQKILRLTQLAKKSSMFNDPTVEIQELTALIKNDITALNSALLDLQTIQNMEIADGNYSDDRIVHSTAVCDDLKGKLMGATKQLQDVLTARTENIKAHENRKQIFSKKASRDIPFQHRSKPVTEPPPWSNSLSASESSQQTSASLSNEVTPSNQLRRRLATDNTPSQQMEMSMMQQVVPRQESYAQSRASALHSVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLKHLSKISSNRWLLIKIFAVLILFLLIFILFVA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2728 339 CDD SNARE_syntaxin5 250 326 - -
Acco10g2728 339 Pfam SNARE domain 284 335 IPR000727 -
Acco10g2728 339 MobiDBLite consensus disorder prediction 164 183 - -
Acco10g2728 339 MobiDBLite consensus disorder prediction 188 223 - -
Acco10g2728 339 SUPERFAMILY t-snare proteins 49 302 IPR010989 GO:0016020|GO:0016192
Acco10g2728 339 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Acco10g2728 339 PANTHER SYNTAXIN 49 334 IPR045242 -
Acco10g2728 339 Gene3D - 46 302 - -
Acco10g2728 339 SMART tSNARE_6 242 309 IPR000727 -
Acco10g2728 339 MobiDBLite consensus disorder prediction 164 223 - -
Acco10g2728 339 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 247 309 IPR000727 -
Acco10g2728 339 ProSitePatterns Syntaxin / epimorphin family signature. 253 292 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2728 Acco-ChrAcco10 37668205 37670446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2728 1 339 SNARE and Associated Proteins AT5G05760 67.647 2.55e-155 437