Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2712 ATGGCTTCCACCTTCATCGCCAGTGACCCCTTCATCGCTGGTGACCTCTCGGCAAAGCAAGGAACATGGCCTTCTCGATTTTCGTCTCATAGACATTCACTCGTCTCACTCCCATACTACTCCTCGACGCTGTTCAATTTTCCAAAGATTCTGGGCATGTGCAGTGGTTCAAAAAGTAAGCTTTCTCCCTCGAACGACACCATGGAAAGCGAGTCTCCAAAGCGGAGCTTGAGGAGCGACTCTTCGGTTTTGCTGGAACTCTCAGCATCCGATGATCTTGAAGCTTTCAGAAAAGAGGTGGAAGAGAAGGGCTGCGGCATCGACACAGCTAGCTTATGGTATGGTAGAAGAATTGGATCGAAGAAGATGGGGTGGGAGAAGAGAACAGCCCTCATGATTGCGTCCTCATTTGGAAGTACTAGAGTGTTGAAGTACATAATTGAGACTGGCAGGGTTGATGTGAACAAAACCTGTGGTTCTGATATGGCCACGGCTCTTCACTGTGCTGTTGTTGGTGGCTCTCAATCTTCACTTGACGTTGTTCAGCTCTTGCTTGATGCTGGAGCCGATGCTGACTGCCTTGATGCAAGTGGAAATAAGCCTGTCAATTTAATTGCCCCTGCCTTCAATTCCTTCTCCAACGCTAGAAGAAAGGCCATAGAGTTGTTGCTAAGAGGTGGGCAAGGAGATCAAATCATCAGTCAGGAGATGGAGCAACATAAAATTGCAGTGTCTGCTTTGTCCTCAAAAGAAGGAACTGAGAAAAAAGAATATCCTGTTGATGTATCATTACCTGACATAAACAGTGGTATATACGGAACGGACGAGTTCAGAATGTACAGTTTCAAGGTGAAGCCATGTTCAAGGGCTTACTCACATGATTGGACAGAGTGTCCGTTTGTTCATCCTGGGGAGAATGCCAGGAGGAGGGATCCACGTAAATACCCTTACAGCTGCGTCCCCTGCCCTGAGTTTCGCAAGGGCACGTGCCAGAAGGGAGATGCTTGTGAGTATGCACACGGTGTTTTTGAGTCCTGGCTCCATCCTGCTCAATACAGAACTAAGCTTTGCAAGGATGAGATTGGATGCACTAGGAGAGTTTGTTTCTTTGCTCATAAAATTGAAGAGTTGCGTCCTGTGTATGCTTTTACTGGCTCTGCCGTGCCTTCTCCAAAGTCCTTGGCTAGTAGTGTACTTGATATGACTTCAATGAGTCCTTTGGCTCTTAGTTCCTCATCTTTGCCTATGTCAACTGTTTCAACTCCGCCCATGTCTCCCATCGCAGCTTCATCACCTCCTAAGAGTGGAGGCTTTTGGCAGAATCAAAGAAACCTCACCCCACTATCGTTGCAGCTCCCTGGGAGCCGGCTGAAGGCCACCTTGAGTGCCAGGGATCTGGATATGGATATGGAGCTGCTTGGACTGGAAAGTCCTGCAAACCAGCATCAGCAGCAATTGGCTCGAATCTCCTCCATGTCCTTGCGAAACAAAGACTTCGGTAGGATCAGTGATTTGAACCCCACGAACCTTGATGACTTTCTAGGATCTGTTGATCATTTTGGATCACCTCAATTACATGGCCTTTCAGCACAACTCTCGTTGTCTAGTCAATTGAACTCCCCTAGTGGGCTTCAAATGCGCCAAAACATGAACCCTCTTCGTGCTAGCTATCCAACCAACATATCTTCCTCTCAAGTGAGGAAATCCTCTGCATTTGGGTTTGACTCATCAGCTGCTGTGGCGGCAGCAGTGATGAATTCCAGGTCTGCTGCCTTTGCCAATAGAAGCCAGAGTTTTATTGATCGCGGTGAATCGGTGAGCCACCACCATCTTGGACTTTCTTCGCCTTCCCACCCTTCCTGTAGGGCGTCCTCTGCTCTTTCTTCAGATTGGAGTTCTCCTGATGGAAAATTGGATTGGGGCATGAATGGACATGAAATGAACATGCTGAAGAAATCTGCTTCATTTGGGTTTAGGAATAATGGGGTTTCTGCCACCTCCATGGCTCCATCGGAACACAGTGAACCAGATGTGTCATGGGTTCATTCCTTGGTTAAAGATGTGCCCCCCGAAGAGTTGTGTTGCTGA 2088 0.4784 MASTFIASDPFIAGDLSAKQGTWPSRFSSHRHSLVSLPYYSSTLFNFPKILGMCSGSKSKLSPSNDTMESESPKRSLRSDSSVLLELSASDDLEAFRKEVEEKGCGIDTASLWYGRRIGSKKMGWEKRTALMIASSFGSTRVLKYIIETGRVDVNKTCGSDMATALHCAVVGGSQSSLDVVQLLLDAGADADCLDASGNKPVNLIAPAFNSFSNARRKAIELLLRGGQGDQIISQEMEQHKIAVSALSSKEGTEKKEYPVDVSLPDINSGIYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDACEYAHGVFESWLHPAQYRTKLCKDEIGCTRRVCFFAHKIEELRPVYAFTGSAVPSPKSLASSVLDMTSMSPLALSSSSLPMSTVSTPPMSPIAASSPPKSGGFWQNQRNLTPLSLQLPGSRLKATLSARDLDMDMELLGLESPANQHQQQLARISSMSLRNKDFGRISDLNPTNLDDFLGSVDHFGSPQLHGLSAQLSLSSQLNSPSGLQMRQNMNPLRASYPTNISSSQVRKSSAFGFDSSAAVAAAVMNSRSAAFANRSQSFIDRGESVSHHHLGLSSPSHPSCRASSALSSDWSSPDGKLDWGMNGHEMNMLKKSASFGFRNNGVSATSMAPSEHSEPDVSWVHSLVKDVPPEELCC 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2712 695 Gene3D - 55 250 IPR036770 -
Acco10g2712 695 PANTHER UNKEMPT FAMILY MEMBER 86 688 IPR045234 -
Acco10g2712 695 Gene3D - 317 379 - -
Acco10g2712 695 FunFam Zinc finger CCCH domain-containing protein 66 274 342 - -
Acco10g2712 695 MobiDBLite consensus disorder prediction 58 79 - -
Acco10g2712 695 SMART c3hfinal6 316 342 IPR000571 GO:0046872
Acco10g2712 695 SUPERFAMILY Ankyrin repeat 82 203 IPR036770 -
Acco10g2712 695 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 341 IPR000571 GO:0046872
Acco10g2712 695 ProSiteProfiles Ankyrin repeat region circular profile. 161 195 - -
Acco10g2712 695 ProSiteProfiles Ankyrin repeat profile. 161 196 IPR002110 GO:0005515
Acco10g2712 695 SMART ANK_2a 161 193 IPR002110 GO:0005515
Acco10g2712 695 SMART ANK_2a 126 156 IPR002110 GO:0005515
Acco10g2712 695 Pfam Ankyrin repeats (3 copies) 122 192 IPR002110 GO:0005515
Acco10g2712 695 ProSiteProfiles Zinc finger C3H1-type profile. 316 343 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2712 Acco-ChrAcco10 37552429 37555929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2712 82 687 C2H2 Transcription Factor Family AT5G12850 40.701 3.02e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco10g2712 Ank_2 1.9e-07 CL0465