Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2707 ATGACAAGCCAAGATTCCCAGGGTTTTACTTGGCACTACACGGAGCTGGACGACCGGAATCTCGAAATCCGAGGCCGAACATTTTTCTTTGTGGTCGTGCTGTTCTCCATTATCCTTATTGTGACCCTTCTCTTCCTTTATGCTCGCTGGATCTGGAGGTACCGGGGCCAACATCCCACCACCTACCATCCCAACGGAGCGCGCCTCTCGCCGCCTCCTCCTCCGCCACAGGGCCTCGATCCTGCTTCGATCAAGAATATGCCTATAGTTTTGCACCAAAGGACTTCGGATGGCAACAGTAAATTGGAGGAAACAGAGTGCTGTATTTGCCTCGGCACGTTCAAAGATGGAGAGAAATTGAAGGTTTTACCCGGCTGTGACCACAGCTTCCATTGTGAGTGTGTTGATAGGTGGCTTTCCAATCACTCTAGTTGTCCTCTCTGTAGATCTTCTCTCAAGGTTCATTCTTCCTTTCCCAAGATTTTGATTCAAGAACCACCCCATCGAATCAACATTCCCTTCCTATGGGTTGGGCGTGTGAGTCCTACAGGGACATATGGTCCAGCTTGGTGTCACGTTGGGCAAAATGGAAATGGAAAGTTGGGTTGTCGCGTGACAGGGAAAGCTGGTTGCGTCCAACCCCACCTTTTGTATGTTAAGCTGGGCTTTGCTTTCTTGCAGCTTGGCCCTGTGGGAGTGACTGTGTTGGAGATAAAGGCAGTGGAGTAG 729 0.5034 MTSQDSQGFTWHYTELDDRNLEIRGRTFFFVVVLFSIILIVTLLFLYARWIWRYRGQHPTTYHPNGARLSPPPPPPQGLDPASIKNMPIVLHQRTSDGNSKLEETECCICLGTFKDGEKLKVLPGCDHSFHCECVDRWLSNHSSCPLCRSSLKVHSSFPKILIQEPPHRINIPFLWVGRVSPTGTYGPAWCHVGQNGNGKLGCRVTGKAGCVQPHLLYVKLGFAFLQLGPVGVTVLEIKAVE 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2707 242 CDD RING-H2_EL5-like 106 149 - -
Acco10g2707 242 Pfam Ring finger domain 106 149 IPR001841 -
Acco10g2707 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 155 - -
Acco10g2707 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 155 IPR013083 -
Acco10g2707 242 FunFam RING-H2 finger protein ATL66 71 154 - -
Acco10g2707 242 SUPERFAMILY RING/U-box 101 156 - -
Acco10g2707 242 SMART ring_2 107 148 IPR001841 -
Acco10g2707 242 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2707 Acco-ChrAcco10 37499375 37500511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2707 4 157 C3H Transcription Factor Family AT3G11110 43.750 1.01e-35 122